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[180087_at]

Description W05F2.6 /REP_DB=WormBase Gene ID /WP=CE21260 /TR=Q9TYT7 /GB=AAC78219.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_total > 97      4grp_total > 24      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 303
1 2 3 4 range
A 79.8
(-3)
P 		170.7
(0.1)
P 		211
(1.4)
P 		257.7
(3)
P 		178
B 95.2
(-3)
P 		203.8
(0.2)
P 		212
(0.4)
P 		299.8
(3)
P 		205
C 73.2
(-3)
P 		159.8
(-1.3)
P 		259.4
(0.7)
P 		376.2
(3)
P 		303
avr 82.7
(-3) 		178.1
(-0.5) 		227.5
(0.8) 		311.2
(3) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1000
1 2 3 4 5 6 range
A 82.1
(-3)
A 		92.9
(-2.9)
P 		172
(-2.4)
P 		303.9
(-1.6)
P 		658.7
(0.6)
P 		1038.9
(3)
P 		957
B 65.6
(-3)
P 		65.7
(-3)
P 		147.7
(-2.5)
P 		345.4
(-1.2)
P 		648.2
(0.7)
P 		1016.6
(3)
P 		951
C 73.1
(-3)
P 		119.4
(-2.7)
P 		128.8
(-2.7)
P 		317.4
(-1.5)
P 		693.4
(0.7)
P 		1065.6
(3)
P 		993
avr 73.6
(-3) 		92.7
(-2.9) 		149.5
(-2.5) 		322.2
(-1.5) 		666.8
(0.7) 		1040.4
(3) 		967
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 29.1
(-3)
P 		37
(-1.2)
P 		55.2
(3)
P 		37.7
(-1)
P 		26
B 30.4
(-3)
P 		50.3
(0.6)
P 		49.1
(0.3)
P 		63.9
(3)
P 		34
C 24.2
(-3)
P 		45.9
(-1)
P 		90.4
(3)
P 		63.4
(0.6)
P 		66
avr 27.9
(-3) 		44.4
(-0.3) 		64.9
(3) 		55
(1.4) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 364
1 2 3 4 5 6 range
A 15.1
(-3)
A 		33
(-2.5)
P 		37.5
(-2.4)
P 		77.1
(-1.4)
P 		198.8
(1.6)
P 		252.9
(3)
P 		238
B 22.8
(-3)
P 		21.9
(-3)
P 		35.9
(-2.8)
P 		91.5
(-1.8)
P 		263.4
(1.1)
P 		379.1
(3)
P 		357
C 27.1
(-3)
P 		36.4
(-2.8)
P 		32.8
(-2.9)
P 		63.8
(-2.3)
P 		224.4
(0.6)
P 		356.7
(3)
P 		330
avr 21.7
(-3) 		30.4
(-2.8) 		35.4
(-2.7) 		77.5
(-1.9) 		228.9
(1) 		329.6
(3) 		308
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180087_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.159
Sequence Type Exemplar sequence
Representative Public ID W05F2.6 NCBI
Target Description W05F2.6 /REP_DB=WormBase Gene ID /WP=CE21260 /TR=Q9TYT7 /GB=AAC78219.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058750(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058750 NCBI Caenorhabditis elegans W05F2.6 (W05F2.6) mRNA, complete cds. 11/11 None
SNAP00000029375 ENSEMBL cdna:SNAP chromosome:CEL140:I:3368861:3373833:1 10/11 None
GENEFINDER00000029385 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3368861:3371385:1 10/11 None
W05F2.6 ENSEMBL cdna:known chromosome:CEL140:I:3368821:3371442:1 gene:W05F2.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3368860-3371385(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W05F2.6
Entrez Gene 171909 Entrez gene
SwissProt Q9TYT7 EMBL-EBI
WormBase CE21260 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491151 W05F2.6 [Caenorhabditis elegans] gb|AAC78219.1| Hypothetical protein W05F2.6 [Caenorhabditis elegans] 0.0
blast NP_491152 W05F2.5 [Caenorhabditis elegans] gb|AAC78216.1| Hypothetical protein W05F2.5 [Caenorhabditis elegans] 1.0E-157
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 6.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.7E-29
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.8E-8
Sequence
Target Sequence 
>C. ELEGANS:180087_AT
attacaggatccactggcacgcatcaagttagctaccgagaagctaaaggagagacgagc
tcaacttgacacgcagaagaagcacactatgttcttgccagaggcttttattggccccca
tttcaatgagacaattgcttctggattctacgccttgttcaacgcttcccacttccaagt
tcactacaatagcgagggcaaacgtttaggctccggaacaatgtgtgttctgaagaacca
aatgaatggtgctcgtgattggttcgctggcaacacgtggcgtgccgtcaaaatgatgta
tatgcgtacacgtgacgcagagaagcacaagaattcggaagtgaagttgttcgtggaaaa
acttccagattggagcaccgagcagcttgaggaaaagcttcgcaatgagttcaagttgtc
agattttcaacttctttacgattacaagggaaataacttgagaagcgccatagttcttct
gaaatatccagatgcaatcaatctctgcaattctattcgttccaatccaactgtattcgg
aaaggaatggcacccgagagtcttcgaagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTACAGGATCCACTGGCACGCATC 575 11 777 Antisense
GGCACGCATCAAGTTAGCTACCGAG 299 535 792 Antisense
AGACGAGCTCAACTTGACACGCAGA 323 71 829 Antisense
GAAGCACACTATGTTCTTGCCAGAG 417 341 855 Antisense
TGCCAGAGGCTTTTATTGGCCCCCA 270 587 872 Antisense
TTCCCACTTCCAAGTTCACTACAAT 285 697 942 Antisense
GCGAGGGCAAACGTTTAGGCTCCGG 399 283 968 Antisense
TGCTCGTGATTGGTTCGCTGGCAAC 340 579 1026 Antisense
AATCTCTGCAATTCTATTCGTTCCA 604 169 1276 Antisense
TTCGTTCCAATCCAACTGTATTCGG 524 695 1292 Antisense
ATGGCACCCGAGAGTCTTCGAAGTG 540 51 1323 Antisense
Sequence Source Affymetrix Proprietary Database