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[180086_at]

Description C50F2.2 /REP_DB=WormBase Gene ID /WP=CE27877 /TR=P91176 /GB=AAB37795.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 15      6grp_cgc > 18      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 116.2
(3)
P 		71.6
(-2.3)
A 		65.6
(-3)
A 		93
(0.2)
M 		51
B 169.6
(3)
P 		69.8
(-3)
A 		101.1
(-1.1)
A 		142.7
(1.4)
P 		100
C 120.4
(1.9)
P 		26.8
(-3)
A 		90.5
(0.3)
A 		142.4
(3)
P 		116
avr 135.4
(3) 		56.1
(-3) 		85.7
(-0.8) 		126
(2.3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 97.4
(1.2)
P 		113.1
(2.3)
P 		50.9
(-2)
A 		36.2
(-3)
A 		94.9
(1.1)
A 		122.8
(3)
P 		87
B 74.2
(-1.7)
P 		95
(-0.6)
A 		66.4
(-2.1)
A 		87.7
(-1)
P 		50.6
(-3)
M 		161
(3)
P 		110
C 162.9
(3)
P 		101.5
(0.5)
P 		111.4
(0.9)
A 		13.2
(-3)
A 		75.7
(-0.5)
A 		135.2
(1.9)
P 		150
avr 111.5
(1.2) 		103.2
(0.7) 		76.2
(-1.1) 		45.7
(-3) 		73.7
(-1.2) 		139.7
(3) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 42.3
(3)
P 		15.5
(-2.6)
A 		17.2
(-2.2)
A 		13.6
(-3)
M 		29
B 54.1
(3)
P 		17.2
(-3)
A 		23.4
(-2)
A 		30.4
(-0.9)
P 		37
C 39.8
(3)
P 		7.7
(-3)
A 		31.6
(1.5)
A 		24
(0)
P 		32
avr 45.4
(3) 		13.5
(-3) 		24.1
(-1) 		22.7
(-1.3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 18
(-1.3)
P 		40.2
(3)
P 		11.1
(-2.6)
A 		9.2
(-3)
A 		28.6
(0.8)
A 		29.9
(1)
P 		31
B 25.8
(-1.7)
P 		31.6
(-0.9)
A 		16.1
(-3)
A 		23.2
(-2)
P 		20.6
(-2.4)
M 		60
(3)
P 		44
C 60.4
(3)
P 		31
(-0.1)
P 		28.4
(-0.3)
A 		2.6
(-3)
A 		24.5
(-0.7)
A 		45.3
(1.4)
P 		58
avr 34.7
(1.1) 		34.3
(1.1) 		18.5
(-1.8) 		11.7
(-3) 		24.6
(-0.7) 		45.1
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180086_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.141
Sequence Type Exemplar sequence
Representative Public ID C50F2.2 NCBI
Target Description C50F2.2 /REP_DB=WormBase Gene ID /WP=CE27877 /TR=P91176 /GB=AAB37795.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058850(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058850 NCBI Caenorhabditis elegans C50F2.2 (C50F2.2) mRNA, complete cds. 11/11 None
SNAP00000013846 ENSEMBL cdna:SNAP chromosome:CEL140:I:3881835:3888217:1 11/11 None
GENEFINDER00000013854 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3881835:3888217:1 11/11 None
C50F2.2 ENSEMBL cdna:known chromosome:CEL140:I:3881830:3888305:1 gene:C50F2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3881834-3888217(+) 97.01 100.0
Public Domain and Genome References
Gene Title
Ensembl C50F2.2
Entrez Gene 171972 Entrez gene
SwissProt P91176 EMBL-EBI
WormBase CE27877 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37795 Hypothetical protein C50F2.2 [Caenorhabditis elegans] ref|NP_491251.1| C50F2.2 [Caenorhabditis elegans] 0.0
blast CAE66643 Hypothetical protein CBG11980 [Caenorhabditis briggsae] 3.0E-92
blast CAE66643 Hypothetical protein CBG11980 [Caenorhabditis briggsae] 5.0E-90
blast NP_524753 CG3064-PB [Drosophila melanogaster] gb|AAF45622.3| CG3064-PB [Drosophila melanogaster] sp|Q9W596|FUTSC_DROME Microtubule-associated protein futsch 2.0E-12
Sequence
Target Sequence 
>C. ELEGANS:180086_AT
agcaagaacaagttgctccgagccgttcgatatcagttcctctagaaatgaaaaatgatt
ttgtgttgtccgatgaggatgatccggtctcgccagtgacgtctacgccgaggaaggagg
atttcaatgatgatctgagcggctgtctggaagaagacgaagaggacactgaaaatttgc
tgccacaagccaaagacgacagcttcatcgacgaactggactggaattatggcacagatt
atgaggaagaggaggtggaagaagctgaagtagttgttgaagaaaaagacaacagtggaa
gtgatcatgatgcaacattggaagatggcgaaatttctgaaaatgatgatggagaagatg
agaagaaagaggaagaaccgaaaaaaccgattcgagaacgaactaaattcatgatcacgg
aggatcagcttggaccaaaaaccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAAGAACAAGTTGCTCCGAGCCG 386 75 2543 Antisense
CCGTTCGATATCAGTTCCTCTAGAA 94 265 2565 Antisense
ATGATTTTGTGTTGTCCGATGAGGA 495 45 2597 Antisense
CGATGAGGATGATCCGGTCTCGCCA 580 249 2613 Antisense
CCAGTGACGTCTACGCCGAGGAAGG 621 271 2635 Antisense
CAATGATGATCTGAGCGGCTGTCTG 496 181 2667 Antisense
GAGGACACTGAAAATTTGCTGCCAC 435 403 2704 Antisense
TTGCTGCCACAAGCCAAAGACGACA 245 703 2719 Antisense
GACAGCTTCATCGACGAACTGGACT 678 367 2740 Antisense
CGAACTGGACTGGAATTATGGCACA 532 249 2754 Antisense
GGATCAGCTTGGACCAAAAACCGAT 220 511 2964 Antisense
Sequence Source Affymetrix Proprietary Database