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[180084_s_at]

Description F10G7.5 /REP_DB=WormBase Gene ID /WP=CE27947 /TR=Q19323 /GB=AAA81125.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 05      4grp_highest_8_8 > 18      4grp_high_8_8 > 55      6grp_highest_nonorm > 21      6grp_total > 04      4grp_total > 56      6grp_highest_sub > De      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 920
1 2 3 4 range
A 1852.1
(-1.6)
P 		1838.7
(-1.7)
P 		2562.6
(3)
P 		1642.8
(-3)
P 		920
B 1898.9
(-3)
P 		2234.4
(3)
P 		2036.6
(-0.5)
P 		2119.6
(0.9)
P 		336
C 1991.9
(-0.9)
P 		2397.9
(2)
P 		2533.5
(3)
P 		1704.5
(-3)
P 		829
avr 1914.3
(-2) 		2157
(0.6) 		2377.6
(3) 		1822.3
(-3) 		555

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1198
1 2 3 4 5 6 range
A 1653.4
(3)
P 		1308.2
(0.7)
P 		1263.5
(0.4)
P 		1097.4
(-0.7)
P 		1298.8
(0.6)
P 		751.8
(-3)
P 		902
B 1949.3
(3)
P 		1538.2
(0.7)
P 		1110.8
(-1.6)
P 		1322.2
(-0.5)
P 		1368.4
(-0.2)
P 		862.2
(-3)
P 		1087
C 1279
(2.1)
P 		1335.4
(2.8)
P 		1120
(0.2)
P 		1351.9
(3)
P 		999.3
(-1.3)
P 		856.8
(-3)
P 		495
avr 1627.2
(3) 		1393.9
(1.3) 		1164.8
(-0.5) 		1257.2
(0.2) 		1222.2
(-0) 		823.6
(-3) 		804
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 643
1 2 3 4 range
A 674.4
(3)
P 		399.1
(-0.8)
P 		669.9
(2.9)
P 		240.5
(-3)
P 		434
B 605.5
(3)
P 		551.9
(0.9)
P 		471.9
(-2.2)
P 		451.7
(-3)
P 		154
C 659.4
(0.7)
P 		689.4
(1)
P 		883
(3)
P 		287.4
(-3)
P 		596
avr 646.4
(2.5) 		546.8
(0.8) 		674.9
(3) 		326.5
(-3) 		348

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 495
1 2 3 4 5 6 range
A 304.8
(-0.4)
P 		465.3
(3)
P 		275.2
(-1)
P 		278.3
(-1)
P 		391.9
(1.4)
P 		183
(-3)
P 		282
B 678.3
(3)
P 		512
(0.6)
P 		269.7
(-3)
P 		350.2
(-1.8)
P 		555.9
(1.2)
P 		321.5
(-2.2)
P 		409
C 474.1
(3)
P 		407.5
(1)
P 		285.1
(-2.6)
P 		271.9
(-3)
P 		323.4
(-1.5)
P 		286.8
(-2.6)
P 		202
avr 485.7
(3) 		461.6
(2.3) 		276.7
(-2.7) 		300.1
(-2) 		423.7
(1.3) 		263.8
(-3) 		222
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180084_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5294
Sequence Type Exemplar sequence
Representative Public ID F10G7.5 NCBI
Target Description F10G7.5 /REP_DB=WormBase Gene ID /WP=CE27947 /TR=Q19323 /GB=AAA81125.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062433(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062433 NCBI Caenorhabditis elegans F10G7.5 (F10G7.5) mRNA, complete cds. 11/11 A 
SNAP00000005192 ENSEMBL cdna:SNAP chromosome:CEL140:II:4693494:4696268:1 10/11 None
GENEFINDER00000005204 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4693494:4696268:1 11/11 None
F10G7.5.1 ENSEMBL cdna:known chromosome:CEL140:II:4693432:4696395:1 gene:F10G7.5 11/11 None
F10G7.5.2 ENSEMBL cdna:known chromosome:CEL140:II:4693529:4696395:1 gene:F10G7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4693534-4696267(+) 98.94 100.0
Public Domain and Genome References
Gene Title
Ensembl F10G7.5
Entrez Gene 173806 Entrez gene
SwissProt Q19323 EMBL-EBI
WormBase CE27947 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494834 F10G7.5 [Caenorhabditis elegans] gb|AAA81125.2| Hypothetical protein F10G7.5 [Caenorhabditis elegans] 0.0
blast E88130 protein F10G7.5 [imported] - Caenorhabditis elegans 0.0
blast CAE67829 Hypothetical protein CBG13412 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494834.1 12 21-43,58-80,87-109,113-135,147-169,195-217,254-271,286-308,315-334,344-366,379-401,406-428
F10G7.5.1 12 21-43,58-80,87-109,113-135,147-169,195-217,254-271,286-308,315-334,344-366,379-401,406-428
F10G7.5.2 12 21-43,58-80,87-109,113-135,147-169,195-217,254-271,286-308,315-334,344-366,379-401,406-428
SNAP00000005192 10 31-53,68-90,97-119,129-151,178-200,236-258,271-293,298-320,327-346,350-372
GENEFINDER00000005204 12 33-55,75-94,99-121,128-150,160-182,209-231,267-289,302-324,329-351,358-380,395-417,424-443
Sequence
Target Sequence 
>C. ELEGANS:180084_S_AT
atgtatggatttttgcagtgtgcagtgaccgggtaccgtattcgcgaatacatgaataca
tttcagagtgtcgccggactaatcgctggactcatttcaacacatgctctttctgaaatc
ggatttgaatatcttttcattgtttgtggatgcttcatgttgacctcacttttcctcact
tttatcgtccacaaaaccgatttagctcagttgttggtttctgctgaacgagaacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTATGGATTTTTGCAGTGTGCAG 646 47 1150 Antisense
GACTAATCGCTGGACTCATTTCAAC 569 373 1226 Antisense
GACTCATTTCAACACATGCTCTTTC 619 373 1238 Antisense
CAACACATGCTCTTTCTGAAATCGG 521 189 1247 Antisense
GAAATCGGATTTGAATATCTTTTCA 248 363 1264 Antisense
ATCTTTTCATTGTTTGTGGATGCTT 323 31 1280 Antisense
GTGGATGCTTCATGTTGACCTCACT 585 489 1295 Antisense
TCCTCACTTTTATCGTCCACAAAAC 693 589 1322 Antisense
GTCCACAAAACCGATTTAGCTCAGT 503 475 1336 Antisense
TTAGCTCAGTTGTTGGTTTCTGCTG 445 681 1351 Antisense
GTTGGTTTCTGCTGAACGAGAACAT 66 435 1362 Antisense
Sequence Source Affymetrix Proprietary Database