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[180083_at]

Description F10G7.5 /REP_DB=WormBase Gene ID /WP=CE27947 /TR=Q19323 /GB=AAA81125.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 33      4grp_high_8_8 > 51      6grp_highest_nonorm > 51      6grp_total > 03      4grp_total > 61      6grp_highest_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 632
1 2 3 4 range
A 868
(3)
P 		765.1
(1.8)
P 		780.9
(2)
P 		339.6
(-3)
P 		528
B 837.7
(2.8)
P 		845
(3)
P 		648.4
(-3)
P 		813.2
(2)
P 		197
C 839.9
(1.1)
P 		778.1
(0.2)
P 		971.5
(3)
P 		554.2
(-3)
P 		417
avr 848.5
(3) 		796.1
(1.9) 		800.3
(2) 		569
(-3) 		280

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 430
1 2 3 4 5 6 range
A 525.1
(2.3)
P 		564
(3)
P 		343.7
(-1.2)
P 		444.9
(0.7)
P 		478.1
(1.4)
P 		246.4
(-3)
P 		318
B 528.9
(1.3)
P 		626.6
(3)
P 		471.3
(0.4)
P 		517.9
(1.2)
P 		525.4
(1.3)
P 		273
(-3)
P 		354
C 674
(3)
P 		676.6
(3)
P 		547.5
(0.9)
P 		512
(0.3)
P 		424.1
(-1.2)
P 		313.3
(-3)
P 		363
avr 576
(2.2) 		622.4
(3) 		454.2
(0.1) 		491.6
(0.7) 		475.9
(0.5) 		277.6
(-3) 		345
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 289
1 2 3 4 range
A 316.1
(3)
P 		166.1
(-0.4)
P 		204.1
(0.5)
P 		49.7
(-3)
P 		266
B 267.1
(3)
P 		208.7
(-0)
P 		150.3
(-3)
P 		173.3
(-1.8)
P 		117
C 278
(1.5)
P 		223.7
(0.2)
P 		338.6
(3)
P 		93.4
(-3)
P 		245
avr 287.1
(3) 		199.5
(0.1) 		231
(1.1) 		105.5
(-3) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 96.8
(-1.4)
P 		200.6
(3)
P 		74.8
(-2.4)
P 		112.8
(-0.7)
P 		144.3
(0.6)
P 		60
(-3)
P 		141
B 184
(1.4)
P 		208.6
(2.7)
P 		114.4
(-2.3)
P 		137.2
(-1.1)
P 		213.5
(3)
P 		101.8
(-3)
P 		112
C 249.8
(3)
P 		206.4
(1.2)
P 		139.3
(-1.5)
P 		103
(-3)
P 		137.2
(-1.6)
P 		104.9
(-2.9)
P 		147
avr 176.9
(1.5) 		205.2
(3) 		109.5
(-1.9) 		117.7
(-1.5) 		165
(0.9) 		88.9
(-3) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180083_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5294
Sequence Type Exemplar sequence
Representative Public ID F10G7.5 NCBI
Target Description F10G7.5 /REP_DB=WormBase Gene ID /WP=CE27947 /TR=Q19323 /GB=AAA81125.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062433(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062433 NCBI Caenorhabditis elegans F10G7.5 (F10G7.5) mRNA, complete cds. 10/11 A 
GENEFINDER00000005204 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4693494:4696268:1 10/11 None
F10G7.5.1 ENSEMBL cdna:known chromosome:CEL140:II:4693432:4696395:1 gene:F10G7.5 10/11 None
F10G7.5.2 ENSEMBL cdna:known chromosome:CEL140:II:4693529:4696395:1 gene:F10G7.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005192 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4693534-4696267(+) 98.94 100.0
Public Domain and Genome References
Gene Title
Ensembl F10G7.5
Entrez Gene 173806 Entrez gene
SwissProt Q19323 EMBL-EBI
WormBase CE27947 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494834 F10G7.5 [Caenorhabditis elegans] gb|AAA81125.2| Hypothetical protein F10G7.5 [Caenorhabditis elegans] 0.0
blast E88130 protein F10G7.5 [imported] - Caenorhabditis elegans 0.0
blast CAE67829 Hypothetical protein CBG13412 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494834.1 12 21-43,58-80,87-109,113-135,147-169,195-217,254-271,286-308,315-334,344-366,379-401,406-428
F10G7.5.1 12 21-43,58-80,87-109,113-135,147-169,195-217,254-271,286-308,315-334,344-366,379-401,406-428
F10G7.5.2 12 21-43,58-80,87-109,113-135,147-169,195-217,254-271,286-308,315-334,344-366,379-401,406-428
GENEFINDER00000005204 12 33-55,75-94,99-121,128-150,160-182,209-231,267-289,302-324,329-351,358-380,395-417,424-443
Sequence
Target Sequence 
>C. ELEGANS:180083_AT
tgcaatgccgtttgggtccaactcacaagtggtctctacaaagcttatgggcaacaattt
atcgattctgacttctttttgagcttgatcggatcgatatcctcgattttcaacgctggg
agcagagttttttggggtgcaattgcggatacgacatcctatcaattttccatgtcgatt
gtgtgcagcctgggagcagttttggcattttcgatgccactggtgaaaatggtatccaat
gatgttctgtttttggccaccgtttgtctgatgttttcctgcatcggaggcacattttca
atctttccttacatcacgcacaagtgttttagtaaggcgaatttcagtgttatgtatgga
tttttgcagtgtgcagtgaccgggtaccgtattcgcgaatacatgaatacatttcagagt
gtcgccggact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAATGCCGTTTGGGTCCAACTCA 207 575 799 Antisense
GGTCCAACTCACAAGTGGTCTCTAC 705 501 813 Antisense
GACTTCTTTTTGAGCTTGATCGGAT 628 325 868 Antisense
ATCCTCGATTTTCAACGCTGGGAGC 475 39 897 Antisense
ATACGACATCCTATCAATTTTCCAT 540 21 947 Antisense
TTTCCATGTCGATTGTGTGCAGCCT 57 669 965 Antisense
CAATGATGTTCTGTTTTTGGCCACC 73 183 1035 Antisense
GATGTTTTCCTGCATCGGAGGCACA 689 407 1068 Antisense
GGAGGCACATTTTCAATCTTTCCTT 647 515 1084 Antisense
ATCTTTCCTTACATCACGCACAAGT 294 31 1099 Antisense
ATACATTTCAGAGTGTCGCCGGACT 177 25 1205 Antisense
Sequence Source Affymetrix Proprietary Database