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[180082_at]

Description W04E12.1 /REP_DB=WormBase Gene ID /WP=CE18996 /TR=Q9XUL5 /GB=CAB04911.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 35      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 1.2
(-3)
A 		20.2
(3)
A 		2.1
(-2.7)
A 		6.8
(-1.2)
A 		19
B 1.2
(-3)
A 		3.7
(2.2)
A 		3.2
(1.1)
A 		4.1
(3)
A 		3
C 2.6
(-3)
A 		33.6
(3)
A 		2.8
(-3)
A 		28.5
(2)
A 		31
avr 1.7
(-3) 		19.2
(3) 		2.7
(-2.7) 		13.1
(0.9) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.7
(-2.4)
A 		1.6
(-3)
A 		1.6
(-3)
A 		1.9
(-2.8)
A 		13.4
(3)
A 		4.9
(-1.3)
A 		12
B 4.1
(-1.8)
A 		1
(-3)
A 		14.5
(2.3)
A 		3.5
(-2)
A 		2.4
(-2.4)
A 		16.2
(3)
A 		15
C 1
(-3)
A 		5.6
(-1.2)
A 		1.1
(-3)
A 		3.2
(-2.1)
A 		1.4
(-2.8)
A 		16.4
(3)
A 		15
avr 2.6
(-3) 		2.7
(-2.9) 		5.7
(-1.1) 		2.9
(-2.8) 		5.7
(-1.1) 		12.5
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.4
(-3)
A 		4.4
(3)
A 		0.5
(-2.9)
A 		1
(-2.1)
A 		4
B 0.4
(-3)
A 		0.9
(3)
A 		0.8
(1.8)
A 		0.9
(3)
A 		1
C 0.8
(-3)
A 		9.7
(3)
A 		1
(-2.9)
A 		4.8
(-0.3)
A 		9
avr 0.5
(-3) 		5
(3) 		0.8
(-2.6) 		2.2
(-0.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.5
(-2.7)
A 		0.6
(-2.5)
A 		0.3
(-3)
A 		0.5
(-2.7)
A 		4.1
(3)
A 		1.2
(-1.6)
A 		4
B 1.4
(-1.8)
A 		0.3
(-3)
A 		3.5
(0.4)
A 		0.9
(-2.4)
A 		1
(-2.3)
A 		6
(3)
A 		6
C 0.4
(-2.9)
A 		1.7
(-1.4)
A 		0.3
(-3)
A 		0.6
(-2.7)
A 		0.5
(-2.8)
A 		5.5
(3)
A 		5
avr 0.8
(-2.8) 		0.9
(-2.7) 		1.4
(-1.8) 		0.7
(-3) 		1.9
(-0.9) 		4.2
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180082_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13547
Sequence Type Exemplar sequence
Representative Public ID W04E12.1 NCBI
Target Description W04E12.1 /REP_DB=WormBase Gene ID /WP=CE18996 /TR=Q9XUL5 /GB=CAB04911.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075423(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075423 NCBI Caenorhabditis elegans W04E12.1 (W04E12.1) mRNA, complete cds. 11/11 None
SNAP00000038161 ENSEMBL cdna:SNAP chromosome:CEL140:V:19734025:19745677:1 9/11 None
GENEFINDER00000038169 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19735649:19737144:1 9/11 None
W04E12.1 ENSEMBL cdna:known chromosome:CEL140:V:19736415:19737391:1 gene:W04E12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19736414-19737391(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04E12.1
Entrez Gene 189188 Entrez gene
SwissProt Q9XUL5 EMBL-EBI
WormBase CE18996 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04911 Hypothetical protein W04E12.1 [Caenorhabditis elegans] ref|NP_507824.1| W04E12.1 [Caenorhabditis elegans] 1.0E-117
blast CAB04911 Hypothetical protein W04E12.1 [Caenorhabditis elegans] ref|NP_507824.1| W04E12.1 [Caenorhabditis elegans] 1.0E-94
blast CAB04911 Hypothetical protein W04E12.1 [Caenorhabditis elegans] ref|NP_507824.1| W04E12.1 [Caenorhabditis elegans] 2.0E-93
blast CAB03799 Hypothetical protein B0391.5 [Caenorhabditis elegans] ref|NP_506881.1| B0391.5 [Caenorhabditis elegans] 5.0E-21
blast T18734 hypothetical protein B0391.6 - Caenorhabditis elegans 8.0E-21
blast CAB03799 Hypothetical protein B0391.5 [Caenorhabditis elegans] ref|NP_506881.1| B0391.5 [Caenorhabditis elegans] 1.0E-19
blast T18734 hypothetical protein B0391.6 - Caenorhabditis elegans 1.0E-19
blast CAB03799 Hypothetical protein B0391.5 [Caenorhabditis elegans] ref|NP_506881.1| B0391.5 [Caenorhabditis elegans] 2.0E-18
blast T18734 hypothetical protein B0391.6 - Caenorhabditis elegans 2.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.5E-28
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.2E-23
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-22
Sequence
Target Sequence 
>C. ELEGANS:180082_AT
gtaacagagtacgaccgccgaatgaatggagttgaaggtggaaaacagatagagcttgca
cttggagacttggaaagaatcgtgaataacccgaaggtcaccttggagacttttcttctg
atgctcatgaactatgatgacatggaagttcgcaagaagcggtacgaagagctcagtgaa
aaattccaaaagtggagctgggcaaaagttgagactctgatgtttggagggttacagttc
aaagaagttggatcgattctaaccaactttgatgccaaaaatctgaaaaagattcaaatg
gacctgttcgatgaggaaatcggaaaggaagtagctgaggaagtcgcggatttggagcaa
tggaaaaatgcaaaagttattgggcttaatgagggctgcaaattggatctaggcattgcc
aacttccttcatttcgatgagcttactgtggcattgaagagatttacagttgaggacgca
gttactgttagagagaagcttctcaaaaccgctgccaacactatggaaattgctcaggtc
tttgagcaacaatacaccccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACAGAGTACGACCGCCGAATGA 11 461 37 Antisense
TAGAGCTTGCACTTGGAGACTTGGA 234 653 86 Antisense
GAAGGTCACCTTGGAGACTTTTCTT 32 335 129 Antisense
GACTTTTCTTCTGATGCTCATGAAC 173 373 144 Antisense
CGATTCTAACCAACTTTGATGCCAA 461 247 290 Antisense
GTAGCTGAGGAAGTCGCGGATTTGG 459 457 367 Antisense
GGATCTAGGCATTGCCAACTTCCTT 254 511 441 Antisense
GCCAACTTCCTTCATTTCGATGAGC 78 277 454 Antisense
TTCGATGAGCTTACTGTGGCATTGA 185 695 469 Antisense
AGAGAAGCTTCTCAAAACCGCTGCC 594 69 528 Antisense
GTCTTTGAGCAACAATACACCCCCA 433 467 574 Antisense
Sequence Source Affymetrix Proprietary Database