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[180080_at]

Description W05F2.7 /REP_DB=WormBase Gene ID /WP=CE14624 /TR=Q9TYU0 /GB=AAC78217.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 76      4grp_highest_8_8 > 55      4grp_high_8_8 > 11      6grp_highest_nonorm > 90      6grp_total > 67      4grp_total > 21      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 237
1 2 3 4 range
A 248.1
(2.2)
P 		192.8
(0.3)
P 		100.4
(-3)
P 		270.2
(3)
P 		170
B 227
(0.2)
P 		192.8
(-0.9)
P 		124.9
(-3)
P 		314.9
(3)
P 		190
C 284.2
(1.5)
P 		119.7
(-3)
P 		118.6
(-3)
P 		337.6
(3)
P 		219
avr 253.1
(1.3) 		168.4
(-1.3) 		114.6
(-3) 		307.6
(3) 		193

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 111.2
(-0.8)
P 		94
(-1.6)
P 		93.9
(-1.6)
P 		64.7
(-3)
P 		113.1
(-0.7)
P 		191.7
(3)
P 		127
B 69.1
(-3)
P 		98
(-1.6)
P 		95.2
(-1.8)
P 		79.9
(-2.5)
P 		75.2
(-2.7)
P 		197.1
(3)
P 		128
C 54.7
(-3)
P 		139.6
(1.1)
P 		94.6
(-1.1)
P 		100.5
(-0.8)
P 		74.3
(-2)
P 		178.4
(3)
P 		124
avr 78.3
(-3) 		110.5
(-1.3) 		94.6
(-2.1) 		81.7
(-2.8) 		87.5
(-2.5) 		189.1
(3) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 90.3
(3)
P 		41.9
(-1.5)
P 		26.3
(-3)
P 		39.5
(-1.8)
P 		64
B 72.4
(3)
P 		47.6
(-0.4)
P 		28.9
(-3)
P 		67.1
(2.3)
P 		44
C 94.1
(3)
P 		34.4
(-3)
P 		41.3
(-2.3)
P 		56.9
(-0.7)
P 		60
avr 85.6
(3) 		41.3
(-2) 		32.2
(-3) 		54.5
(-0.5) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 20.5
(-2.2)
P 		33.4
(0.4)
P 		20.4
(-2.2)
P 		16.4
(-3)
P 		34.1
(0.5)
P 		46.7
(3)
P 		30
B 24
(-2.7)
P 		32.6
(-1.7)
P 		23.1
(-2.8)
P 		21.2
(-3)
P 		30.6
(-1.9)
P 		73.5
(3)
P 		52
C 20.3
(-3)
P 		42.6
(0.4)
P 		24.1
(-2.4)
P 		20.2
(-3)
P 		24
(-2.4)
P 		59.7
(3)
P 		40
avr 21.6
(-2.7) 		36.2
(-0.5) 		22.5
(-2.5) 		19.3
(-3) 		29.6
(-1.5) 		60
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180080_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.113
Sequence Type Exemplar sequence
Representative Public ID W05F2.7 NCBI
Target Description W05F2.7 /REP_DB=WormBase Gene ID /WP=CE14624 /TR=Q9TYU0 /GB=AAC78217.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058746(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058746 NCBI Caenorhabditis elegans W05F2.7 (W05F2.7) mRNA, complete cds. 9/11 A 
W05F2.7 ENSEMBL cdna:known chromosome:CEL140:I:3351446:3363363:1 gene:W05F2.7 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029383 7/11 Cross Hyb Matching Probes None
SNAP00000029371 7/11 Cross Hyb Matching Probes None
SNAP00000029372 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029378 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3351445-3363363(+) 98.49 100.0
Public Domain and Genome References
Gene Title
Ensembl W05F2.7
Entrez Gene 189218 Entrez gene
SwissProt Q9TYU0 EMBL-EBI
WormBase CE32227 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491147 W05F2.7 [Caenorhabditis elegans] gb|AAC78217.2| Hypothetical protein W05F2.7 [Caenorhabditis elegans] 0.0
blast CAB54267 Hypothetical protein K01G5.2c [Caenorhabditis elegans] ref|NP_001022654.1| HP1 Like (heterochromatin protein) family member (hpl-2) [Caenorhabditis elegans] 6.0E-10
blast CAB07243 Hypothetical protein K01G5.2b [Caenorhabditis elegans] ref|NP_001022653.1| HP1 Like (heterochromatin protein) family member (hpl-2) [Caenorhabditis elegans] gb|AAD21196.1| chromo-domain protein [Caenorhabditis elegans] 6.0E-10
Sequence
Target Sequence 
>C. ELEGANS:180080_AT
atagcaccggacaattcttctcaaatgcttggaacgaaacaaaggaacactctggaaata
ttatcgattcatcgaaaacgtggatcagtgacaagttggacggcgattcggcaactggaa
gtccaatcagtgatccaacagtaatcccattggcagcacttccaccattaagtcctgttg
gaggagttgcaagtgtgattcttcccgtcgttcgctcagcaactgaagaaccatcgaaag
tcgagtggaacggtggattgatcagtggccgcgcctttaagaactacagaacactatgta
tcgatttttcaaagaaaaaggaaaacatagatttaaattgtaaatttcgggattttttcg
ccaaaaaaatagccttcctcatgtggtgtcagaaagtctcattgcagtttgatctacaaa
aaatgcgggaattttttccggccaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGCACCGGACAATTCTTCTCAAA 245 23 3491 Antisense
GTGACAAGTTGGACGGCGATTCGGC 621 481 3578 Antisense
GGCGATTCGGCAACTGGAAGTCCAA 673 539 3592 Antisense
CAGTAATCCCATTGGCAGCACTTCC 512 207 3629 Antisense
CACTTCCACCATTAAGTCCTGTTGG 466 195 3647 Antisense
AGTTGCAAGTGTGATTCTTCCCGTC 15 65 3675 Antisense
CCGTCGTTCGCTCAGCAACTGAAGA 244 265 3695 Antisense
ACGGTGGATTGATCAGTGGCCGCGC 6 95 3740 Antisense
TGGCCGCGCCTTTAAGAACTACAGA 173 545 3756 Antisense
AAATAGCCTTCCTCATGTGGTGTCA 660 115 3857 Antisense
ATGCGGGAATTTTTTCCGGCCAATG 706 39 3913 Antisense
Sequence Source Affymetrix Proprietary Database