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[180079_at]

Description C50F2.7 /REP_DB=WormBase Gene ID /WP=CE08913 /TR=P91181 /GB=AAB37800.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 11      4grp_highest_8_8 > 61      4grp_high_8_8 > 18      6grp_highest_nonorm > 51      6grp_total > 23      4grp_total > 30      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 547
1 2 3 4 range
A 857.1
(3)
P 		425.8
(-2.1)
P 		346
(-3)
P 		704.3
(1.2)
P 		511
B 839.8
(3)
P 		491
(-1)
P 		317.8
(-3)
P 		693.7
(1.3)
P 		522
C 864.3
(3)
P 		508.3
(-1.1)
P 		339.4
(-3)
P 		739.6
(1.6)
P 		525
avr 853.7
(3) 		475
(-1.4) 		334.4
(-3) 		712.5
(1.4) 		519

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 566
1 2 3 4 5 6 range
A 822.6
(3)
P 		656.9
(1.2)
P 		772.3
(2.5)
P 		627.9
(0.9)
P 		453.9
(-0.9)
P 		257
(-3)
P 		566
B 792.8
(3)
P 		749.1
(2.5)
P 		591.8
(0.7)
P 		604.1
(0.8)
P 		478.7
(-0.6)
P 		275.8
(-3)
P 		517
C 780.1
(3)
P 		763.4
(2.8)
P 		655.5
(1.5)
P 		700.6
(2.1)
P 		397.5
(-1.5)
P 		270.5
(-3)
P 		510
avr 798.5
(3) 		723.1
(2.1) 		673.2
(1.6) 		644.2
(1.3) 		443.4
(-1) 		267.8
(-3) 		531
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 239
1 2 3 4 range
A 312.1
(3)
P 		92.4
(-2.9)
P 		90.4
(-3)
P 		103.1
(-2.7)
P 		222
B 267.8
(3)
P 		121.3
(-1.5)
P 		73.6
(-3)
P 		147.8
(-0.7)
P 		194
C 286.1
(3)
P 		146.1
(-2)
P 		118.3
(-3)
P 		124.7
(-2.8)
P 		168
avr 288.7
(3) 		119.9
(-2.2) 		94.1
(-3) 		125.2
(-2) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 151.6
(0.1)
P 		233.6
(3)
P 		168.2
(0.7)
P 		159.3
(0.4)
P 		137
(-0.4)
P 		62.6
(-3)
P 		171
B 275.8
(3)
P 		249.4
(2.1)
P 		143.7
(-1.6)
P 		160
(-1)
P 		194.5
(0.2)
P 		102.9
(-3)
P 		173
C 289.1
(3)
P 		232.9
(1.3)
P 		166.8
(-0.7)
P 		140.9
(-1.5)
P 		128.6
(-1.8)
P 		90.5
(-3)
P 		199
avr 238.8
(3) 		238.6
(3) 		159.6
(-0.1) 		153.4
(-0.3) 		153.4
(-0.3) 		85.3
(-3) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180079_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.112
Sequence Type Exemplar sequence
Representative Public ID C50F2.7 NCBI
Target Description C50F2.7 /REP_DB=WormBase Gene ID /WP=CE08913 /TR=P91181 /GB=AAB37800.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058858(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058858 NCBI Caenorhabditis elegans C50F2.7 (C50F2.7) mRNA, complete cds. 11/11 None
SNAP00000013852 ENSEMBL cdna:SNAP chromosome:CEL140:I:3900510:3901333:-1 11/11 None
GENEFINDER00000013861 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3900510:3901333:-1 11/11 None
C50F2.7 ENSEMBL cdna:known chromosome:CEL140:I:3900406:3901352:-1 gene:C50F2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3900509-3901333(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50F2.7
Entrez Gene 183675 Entrez gene
SwissProt P91181 EMBL-EBI
WormBase CE08913 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37800 Hypothetical protein C50F2.7 [Caenorhabditis elegans] ref|NP_491259.1| C50F2.7 [Caenorhabditis elegans] 9.0E-39
blast CAE66694 Hypothetical protein CBG12034 [Caenorhabditis briggsae] 2.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491259.1 1 100-122
C50F2.7 1 100-122
SNAP00000013852 1 100-122
GENEFINDER00000013861 1 100-122
Sequence
Target Sequence 
>C. ELEGANS:180079_AT
tgagactttccgttttattctgctgcgcactttttgcaacaatttttgcagacgataaag
attccagctcttcagaaaatttactttctgacaaatcctctaacatcacaagtgccgatg
catcagatggaaaacttcaaattgaagagcaattcgatggaaatgataactcaacagtaa
catcgaatggaactaaaagcccttcttcagttggatcatctcttccaacaagctcatctg
gtcctgaaatcaagacaacgactcctaaatctggaaaaccaagggctccatctttcactg
cttggtcatttttcatcggtatcatcgtagctttcctgatcattggcatcgctgtctttg
ttctgaagttcttctgccaacgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGACTTTCCGTTTTATTCTGCTG 265 567 14 Antisense
TTATTCTGCTGCGCACTTTTTGCAA 444 679 28 Antisense
AATCCTCTAACATCACAAGTGCCGA 415 167 107 Antisense
AAAAGCCCTTCTTCAGTTGGATCAT 439 129 208 Antisense
CTTCCAACAAGCTCATCTGGTCCTG 284 219 235 Antisense
TCCATCTTTCACTGCTTGGTCATTT 196 591 300 Antisense
GCTTGGTCATTTTTCATCGGTATCA 182 307 313 Antisense
ATCGGTATCATCGTAGCTTTCCTGA 177 35 328 Antisense
TTTCCTGATCATTGGCATCGCTGTC 503 669 345 Antisense
GCATCGCTGTCTTTGTTCTGAAGTT 681 309 359 Antisense
GTTCTGAAGTTCTTCTGCCAACGAC 191 443 373 Antisense
Sequence Source Affymetrix Proprietary Database