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[180078_at]

Description T13B5.7 /REP_DB=WormBase Gene ID /WP=CE13615 /TR=O17377 /GB=AAB71292.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 46      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 50
(3)
A 		48.3
(2.8)
A 		3.7
(-3)
A 		5.5
(-2.8)
A 		46
B 29.5
(3)
A 		3.4
(-3)
A 		3.7
(-2.9)
A 		7.4
(-2.1)
A 		26
C 48.6
(3)
A 		4.6
(-3)
A 		4.8
(-3)
A 		21.4
(-0.7)
A 		44
avr 42.7
(3) 		18.8
(-0.7) 		4.1
(-3) 		11.4
(-1.9) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 42.4
(-1.3)
A 		3.5
(-3)
A 		12.4
(-2.6)
A 		27
(-2)
A 		140
(3)
A 		121.8
(2.2)
A 		137
B 6.3
(-3)
A 		12.3
(-2.6)
A 		7.8
(-2.9)
A 		6.6
(-3)
A 		89.3
(3)
A 		86.1
(2.8)
A 		83
C 9.3
(-2.8)
A 		10.6
(-2.7)
A 		6.4
(-3)
A 		88.7
(3)
A 		40.2
(-0.5)
A 		38.8
(-0.6)
A 		82
avr 19.3
(-2.2) 		8.8
(-3) 		8.9
(-3) 		40.8
(-0.6) 		89.8
(3) 		82.2
(2.4) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 18.2
(3)
A 		10.5
(0.3)
A 		1
(-2.9)
A 		0.8
(-3)
A 		17
B 9.4
(3)
A 		0.8
(-3)
A 		0.9
(-2.9)
A 		1.6
(-2.4)
A 		9
C 16.1
(3)
A 		1.3
(-3)
A 		1.7
(-2.8)
A 		3.6
(-2.1)
A 		15
avr 14.6
(3) 		4.2
(-1.7) 		1.2
(-3) 		2
(-2.6) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 7.8
(-2)
A 		1.2
(-3)
A 		2.7
(-2.8)
A 		6.8
(-2.2)
A 		42.3
(3)
A 		29.6
(1.1)
A 		41
B 2.2
(-2.9)
A 		4.1
(-2.6)
A 		1.9
(-3)
A 		1.7
(-3)
A 		36.3
(3)
A 		32.1
(2.3)
A 		35
C 3.5
(-2.3)
A 		3.2
(-2.4)
A 		1.6
(-3)
A 		17.8
(3)
A 		13
(1.2)
A 		13
(1.2)
A 		16
avr 4.5
(-2.5) 		2.8
(-2.9) 		2.1
(-3) 		8.8
(-1.6) 		30.5
(3) 		24.9
(1.8) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180078_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5108
Sequence Type Exemplar sequence
Representative Public ID T13B5.7 NCBI
Target Description T13B5.7 /REP_DB=WormBase Gene ID /WP=CE13615 /TR=O17377 /GB=AAB71292.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061515(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061515 NCBI Caenorhabditis elegans T13B5.7 (T13B5.7) mRNA, complete cds. 11/11 None
SNAP00000003628 ENSEMBL cdna:SNAP chromosome:CEL140:II:1115658:1118039:-1 11/11 None
GENEFINDER00000003635 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1115658:1118039:-1 11/11 None
T13B5.7 ENSEMBL cdna:known chromosome:CEL140:II:1115658:1118039:-1 gene:T13B5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1115656-1118038(-) 82.19 100.0
Public Domain and Genome References
Gene Title
Ensembl T13B5.7
Entrez Gene 188469 Entrez gene
SwissProt O17377 EMBL-EBI
WormBase CE13615 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16298 lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB71292 Hypothetical protein T13B5.7 [Caenorhabditis elegans] ref|NP_493916.1| T13B5.7 [Caenorhabditis elegans] 1.0E-153
blast AAB71292 Hypothetical protein T13B5.7 [Caenorhabditis elegans] ref|NP_493916.1| T13B5.7 [Caenorhabditis elegans] 1.0E-138
blast AAB71289 Hypothetical protein T13B5.5 [Caenorhabditis elegans] ref|NP_493914.1| T13B5.5 [Caenorhabditis elegans] 1.0E-100
blast AAB71290 Hypothetical protein T13B5.6 [Caenorhabditis elegans] ref|NP_493915.1| T13B5.6 [Caenorhabditis elegans] 1.0E-92
blast AAB71289 Hypothetical protein T13B5.5 [Caenorhabditis elegans] ref|NP_493914.1| T13B5.5 [Caenorhabditis elegans] 2.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR002918 EMBL-EBI Lipase, class 2 1.6E-109
Pfam IPR002918 EMBL-EBI Lipase, class 2 1.3E-117
Sequence
Target Sequence 
>C. ELEGANS:180078_AT
ccgtctacacaacaacatggggcaatacaaccgacacttctcaacgaaatcttgagatga
agtgtgaatatgtgaaacaaatcagaagacttattcttgcagtctcaaactttacgaata
atcaggttgatattgtggcacatggagaaggatccccaattgcaagaaaagcggtgattg
gaggaaaatgtgtggatactaatgaagaactgggagttccactgacgaagtcagttagag
catttgtttctgacaaaggaataaatggaggtattccatgcgaccccaaatatgatacac
gtcgaacttgtctgaatatggacatcgggctcaactgtgcatccaagtttatgaaagaca
taaatgccaaaggaaagcgagaagccgttcactcgattcactccctggcccaacttcgcc
cttgggcaaataaaatgaactgcggcttagacgtctacctcattcccgactcaaaagttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGTCTACACAACAACATGGGGCAA 91 265 386 Antisense
GCAATACAACCGACACTTCTCAACG 199 323 407 Antisense
ATTCTTGCAGTCTCAAACTTTACGA 456 9 478 Antisense
GGCACATGGAGAAGGATCCCCAATT 346 535 522 Antisense
AATGGAGGTATTCCATGCGACCCCA 138 163 649 Antisense
ATGCGACCCCAAATATGATACACGT 58 39 663 Antisense
GATACACGTCGAACTTGTCTGAATA 256 423 679 Antisense
GCGAGAAGCCGTTCACTCGATTCAC 639 289 762 Antisense
GCCCAACTTCGCCCTTGGGCAAATA 362 285 793 Antisense
ATGAACTGCGGCTTAGACGTCTACC 30 45 820 Antisense
TACCTCATTCCCGACTCAAAAGTTT 329 649 841 Antisense
Sequence Source Affymetrix Proprietary Database