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[180076_at]

Description F10G7.6 /REP_DB=WormBase Gene ID /WP=CE02630 /TR=Q19322 /GB=AAA81124.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 17      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 46
(-0.2)
A 		25.1
(-3)
A 		64.7
(2.4)
A 		69.1
(3)
A 		44
B 24.2
(-3)
A 		35.9
(-1.1)
A 		38.4
(-0.7)
A 		61.6
(3)
A 		37
C 21.4
(-2.9)
A 		79.1
(1.3)
A 		20.4
(-3)
A 		102.4
(3)
A 		82
avr 30.5
(-3) 		46.7
(-0.9) 		41.2
(-1.6) 		77.7
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 56.5
(3)
A 		9.7
(-2.8)
A 		8.1
(-3)
A 		17.2
(-1.9)
A 		16.9
(-1.9)
A 		49.9
(2.2)
A 		48
B 11.1
(-2.7)
A 		17
(-1.6)
A 		20.1
(-1.1)
A 		18.4
(-1.4)
A 		9.4
(-3)
A 		42.7
(3)
A 		33
C 57.7
(2.4)
A 		6.2
(-3)
A 		34.7
(0)
A 		63
(3)
A 		45.2
(1.1)
A 		40.8
(0.7)
A 		57
avr 41.8
(2.5) 		11
(-3) 		21
(-1.2) 		32.9
(0.9) 		23.8
(-0.7) 		44.5
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 16.7
(2.9)
A 		5.5
(-3)
A 		16.9
(3)
A 		10.1
(-0.6)
A 		11
B 7.7
(-3)
A 		8.9
(-1.7)
A 		8.9
(-1.7)
A 		13.1
(3)
A 		5
C 7.1
(-3)
A 		22.7
(3)
A 		7.1
(-3)
A 		17.3
(0.9)
A 		16
avr 10.5
(-3) 		12.4
(0.8) 		11
(-2) 		13.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 10.4
(2)
A 		3.4
(-2.1)
A 		1.8
(-3)
A 		4.4
(-1.5)
A 		5.1
(-1.1)
A 		12.1
(3)
A 		10
B 3.9
(-3)
A 		5.7
(-2.1)
A 		4.9
(-2.5)
A 		4.9
(-2.5)
A 		3.8
(-3)
A 		15.9
(3)
A 		12
C 21.4
(3)
A 		1.9
(-3)
A 		8.8
(-0.9)
A 		12.7
(0.3)
A 		14.6
(0.9)
A 		13.7
(0.6)
A 		20
avr 11.9
(1.8) 		3.7
(-3) 		5.2
(-2.1) 		7.3
(-0.9) 		7.8
(-0.6) 		13.9
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180076_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5109
Sequence Type Exemplar sequence
Representative Public ID F10G7.6 NCBI
Target Description F10G7.6 /REP_DB=WormBase Gene ID /WP=CE02630 /TR=Q19322 /GB=AAA81124.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062432(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062432 NCBI Caenorhabditis elegans F10G7.6 (F10G7.6) mRNA, complete cds. 11/11 None
SNAP00000005191 ENSEMBL cdna:SNAP chromosome:CEL140:II:4691682:4693060:1 11/11 None
GENEFINDER00000005206 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4691682:4693060:1 11/11 None
F10G7.6 ENSEMBL cdna:known chromosome:CEL140:II:4692024:4693060:1 gene:F10G7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4692022-4693059(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10G7.6
Entrez Gene 184319 Entrez gene
SwissProt Q19322 EMBL-EBI
WormBase CE02630 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24439 Hypothetical protein W03B1.9 [Caenorhabditis elegans] ref|NP_500548.1| W03B1.9 [Caenorhabditis elegans] 1.0E-134
blast AAC24433 Hypothetical protein W03B1.5 [Caenorhabditis elegans] ref|NP_500547.1| W03B1.5 [Caenorhabditis elegans] 1.0E-134
blast NP_494833 F10G7.6 [Caenorhabditis elegans] gb|AAA81124.1| Hypothetical protein F10G7.6 [Caenorhabditis elegans] 1.0E-131
blast AAC24439 Hypothetical protein W03B1.9 [Caenorhabditis elegans] ref|NP_500548.1| W03B1.9 [Caenorhabditis elegans] 1.0E-127
blast AAC24433 Hypothetical protein W03B1.5 [Caenorhabditis elegans] ref|NP_500547.1| W03B1.5 [Caenorhabditis elegans] 1.0E-127
blast AAC24439 Hypothetical protein W03B1.9 [Caenorhabditis elegans] ref|NP_500548.1| W03B1.9 [Caenorhabditis elegans] 2.0E-84
blast AAC24433 Hypothetical protein W03B1.5 [Caenorhabditis elegans] ref|NP_500547.1| W03B1.5 [Caenorhabditis elegans] 2.0E-84
Sequence
Target Sequence 
>C. ELEGANS:180076_AT
ggaccagttcgaggatgtcactttttacgatcagatcagacattttttgccgaaaaatct
ccaatgtcttgtgatttttggaaactatggtccattgaagaaaaagaaccgattgaacgc
agtcaagaactttgtgattctcctcggtccaaacgctccactcagttcttgtccaaagga
aaatctggctaatgtgaccattctatcgcatttggtccgtcgtccaccatacattccgac
gacaaatagttcaaactttttaagacgtcacgatgtctcagttggaaatctatcctggca
gtttagcttggttgagtggaagaataacaatggagccaagaaagatgtgatggcgttgag
aactcgtctgaatgcggctccaaatgaagatttggtatttgagggagtcgttattgcacc
gcccgtgattcgtgagagattgagagagaatcgtcgcatgccgatgcaacaccttgtgct
tccagttactcctccgttcgatgagcctgatgatcctgctccaccattgccagttgcacc
tcctcctctccatggaccgaacaacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACCAGTTCGAGGATGTCACTTTT 529 521 225 Antisense
CTCCACTCAGTTCTTGTCCAAAGGA 187 233 380 Antisense
CCATTCTATCGCATTTGGTCCGTCG 136 267 422 Antisense
GTCCACCATACATTCCGACGACAAA 649 467 446 Antisense
ATCCTGGCAGTTTAGCTTGGTTGAG 568 39 516 Antisense
TGAGAACTCGTCTGAATGCGGCTCC 285 569 581 Antisense
TGAGGGAGTCGTTATTGCACCGCCC 475 567 624 Antisense
CACCGCCCGTGATTCGTGAGAGATT 197 201 641 Antisense
GAATCGTCGCATGCCGATGCAACAC 449 329 672 Antisense
TCCTCCGTTCGATGAGCCTGATGAT 493 593 714 Antisense
TCCTCTCCATGGACCGAACAACAAC 373 593 768 Antisense
Sequence Source Affymetrix Proprietary Database