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[180075_s_at]

Description W05F2.4 /REP_DB=WormBase Gene ID /WP=CE28506 /TR=Q9TYT5 /GB=AAC78215.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 14      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 60      6grp_total > 04      4grp_total > 39      6grp_highest_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 315
1 2 3 4 range
A 506.5
(2.1)
P 		432.1
(-1.4)
P 		398.9
(-3)
P 		525
(3)
P 		126
B 671.1
(3)
P 		474.7
(-0.7)
P 		454.6
(-1.1)
P 		356.6
(-3)
P 		315
C 445.9
(-1.1)
P 		404.3
(-3)
P 		463.2
(-0.3)
P 		537.1
(3)
P 		133
avr 541.2
(3) 		437
(-3) 		438.9
(-2.9) 		472.9
(-0.9) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 522.2
(2.9)
P 		526.1
(3)
P 		284.3
(-2.5)
P 		365.5
(-0.6)
P 		351.3
(-1)
P 		261.2
(-3)
P 		265
B 518.2
(3)
P 		511
(2.9)
P 		370.7
(-0)
P 		348.2
(-0.5)
P 		303.7
(-1.4)
P 		226.7
(-3)
P 		292
C 498.7
(3)
P 		427.7
(1.5)
P 		402.6
(1)
P 		329.1
(-0.6)
P 		390.2
(0.7)
P 		213.9
(-3)
P 		285
avr 513
(3) 		488.3
(2.5) 		352.5
(-0.5) 		347.6
(-0.6) 		348.4
(-0.5) 		233.9
(-3) 		279
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 184.4
(3)
P 		93.8
(-2.1)
P 		104.3
(-1.5)
P 		76.9
(-3)
P 		108
B 214
(3)
P 		117.2
(-1.2)
P 		105.3
(-1.7)
P 		76
(-3)
P 		138
C 147.6
(1.8)
P 		116.2
(-0.8)
P 		161.4
(3)
P 		90.6
(-3)
P 		71
avr 182
(3) 		109.1
(-1.3) 		123.7
(-0.5) 		81.2
(-3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 96.3
(-1.4)
P 		187.1
(3)
P 		61.9
(-3)
P 		92.7
(-1.5)
P 		106
(-0.9)
P 		63.6
(-2.9)
P 		125
B 180.3
(3)
P 		170.1
(2.4)
P 		90
(-2.7)
P 		92.2
(-2.5)
P 		123.4
(-0.6)
P 		84.5
(-3)
P 		96
C 184.9
(3)
P 		130.5
(0.3)
P 		102.5
(-1.2)
P 		66.2
(-3)
P 		126.3
(0)
P 		71.6
(-2.7)
P 		119
avr 153.8
(2.4) 		162.6
(3) 		84.8
(-2.2) 		83.7
(-2.3) 		118.6
(0) 		73.2
(-3) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180075_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.88
Sequence Type Exemplar sequence
Representative Public ID W05F2.4 NCBI
Target Description W05F2.4 /REP_DB=WormBase Gene ID /WP=CE28506 /TR=Q9TYT5 /GB=AAC78215.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026368(11), NM_001026367(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026368 NCBI Caenorhabditis elegans K03E5.5b (K03E5.5) mRNA, complete cds. 11/11 None
NM_001026367 NCBI Caenorhabditis elegans K03E5.5a (K03E5.5) mRNA, complete cds. 11/11 None
SNAP00000029376 ENSEMBL cdna:SNAP chromosome:CEL140:I:3375100:3380575:-1 9/11 None
K03E5.5b ENSEMBL cdna:known chromosome:CEL140:I:3374791:3386500:-1 gene:K03E5.5 11/11 None
K03E5.5a ENSEMBL cdna:known chromosome:CEL140:I:3375100:3402865:-1 gene:K03E5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3375099-3383103(-) 98.52 100.0
Public Domain and Genome References
Ensembl K03E5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001021539 K03E5.5b [Caenorhabditis elegans] 0.0
blast NP_001021538 K03E5.5a [Caenorhabditis elegans] 0.0
blast T33824 hypothetical protein W05F2.4 - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:180075_S_AT
tcgtatcacgagtacactcctcagccaccgacgactcagccaccacagaggccgccgggc
tcggccaactcgtcgcagggtggatactattcgtcgaatagttcgggcataggatcaaac
tatccacagaatcagcagaatcaaatgtacaataatccacgacgcagtctgatcattgat
caacagtcgatttcctcgagaatgccttccgtggaaaatgatgatgacgacgggttctat
gacaacattggaatttataacgatgatcgtcgatattcccgtggcagtgaacttgaaacg
tcggcctcgttccgtcaacttcctcccgcttccaatacatccaaacacaaccgaatcgga
tcgttccttcgaaagatcggaggcggttcgagtcggccaccgggcagtgcggcgagtttg
atgtcgttgaataagattgcaaatgagacgatcatcaaaccgggagggctcatgaagagc
aatagtttgagcaatgaaccatggaagaaggtgatgctcaacggaggtgcaagtatgcca
agagaagcaaacaacaatcacaaaaccggtctcggagcacgactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTATCACGAGTACACTCCTCAGC 20 605 1945 Antisense
GCCAACTCGTCGCAGGGTGGATACT 628 275 2008 Antisense
AATCCACGACGCAGTCTGATCATTG 600 167 2098 Antisense
TTTCCTCGAGAATGCCTTCCGTGGA 464 669 2135 Antisense
CGATGATCGTCGATATTCCCGTGGC 430 249 2205 Antisense
GCAGTGAACTTGAAACGTCGGCCTC 630 309 2228 Antisense
CAACCGAATCGGATCGTTCCTTCGA 402 185 2292 Antisense
AGATCGGAGGCGGTTCGAGTCGGCC 635 65 2318 Antisense
CCACCGGGCAGTGCGGCGAGTTTGA 45 273 2341 Antisense
GACGATCATCAAACCGGGAGGGCTC 26 379 2391 Antisense
CAAAACCGGTCTCGGAGCACGACTC 175 191 2505 Antisense
Sequence Source Affymetrix Proprietary Database