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[180072_s_at]

Description F13D12.9 /REP_DB=WormBase Gene ID /WP=CE20683 /TR=Q9XTE1 /GB=CAA88952.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 74      6grp_total > 77      4grp_total > 09      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 619
1 2 3 4 range
A 302.5
(-3)
P 		345.6
(-2.5)
P 		397.2
(-1.9)
P 		838.6
(3)
P 		536
B 292.5
(-3)
P 		468.4
(-1.3)
P 		359.4
(-2.4)
P 		911.9
(3)
P 		619
C 372.6
(-2.4)
P 		417.6
(-1.8)
P 		324.4
(-3)
P 		777.2
(3)
P 		453
avr 322.5
(-3) 		410.5
(-2) 		360.3
(-2.6) 		842.6
(3) 		520

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 568
(-3)
P 		601.8
(-2.3)
P 		568.2
(-3)
P 		604.3
(-2.2)
P 		669.3
(-0.8)
P 		838.6
(3)
P 		271
B 555.5
(-3)
P 		632.9
(1.2)
P 		622.5
(0.6)
P 		621.1
(0.6)
P 		575.2
(-1.9)
P 		666.1
(3)
P 		111
C 675.9
(3)
P 		596
(-3)
P 		610.5
(-1.9)
P 		639.2
(0.2)
P 		619
(-1.3)
P 		655.7
(1.5)
P 		80
avr 599.8
(-3) 		610.2
(-2.5) 		600.4
(-3) 		621.5
(-1.9) 		621.2
(-1.9) 		720.1
(3) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 110.1
(1.4)
P 		75
(-3)
P 		103.8
(0.6)
P 		122.8
(3)
P 		48
B 93.3
(-2.5)
P 		115.7
(-1.2)
P 		83.3
(-3)
P 		194.3
(3)
P 		111
C 123.3
(0.4)
P 		120.1
(-0.7)
P 		113.1
(-3)
P 		131
(3)
P 		18
avr 108.9
(-1.9) 		103.6
(-2.6) 		100.1
(-3) 		149.4
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 104.7
(-3)
P 		214
(3)
P 		123.7
(-2)
P 		153.3
(-0.3)
P 		202
(2.3)
P 		204.2
(2.5)
P 		109
B 193.3
(-0.4)
P 		210.7
(0.7)
P 		151.2
(-3)
P 		164.5
(-2.2)
P 		233.7
(2.1)
P 		248.4
(3)
P 		97
C 250.5
(3)
P 		181.8
(-0.4)
P 		155.4
(-1.7)
P 		128.5
(-3)
P 		200.3
(0.5)
P 		219.5
(1.5)
P 		122
avr 182.8
(-0.1) 		202.2
(1.4) 		143.4
(-3) 		148.8
(-2.6) 		212
(2.1) 		224
(3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180072_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3639
Sequence Type Exemplar sequence
Representative Public ID F13D12.9 NCBI
Target Description F13D12.9 /REP_DB=WormBase Gene ID /WP=CE20683 /TR=Q9XTE1 /GB=CAA88952.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064100(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064100 NCBI Caenorhabditis elegans F13D12.9 (F13D12.9) mRNA, complete cds. 11/11 None
F13D12.9 ENSEMBL cdna:known chromosome:CEL140:II:11707071:11709835:-1 gene:F13D12.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019843 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11707559-11709832(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13D12.9
Entrez Gene 174794 Entrez gene
SwissProt Q9XTE1 EMBL-EBI
WormBase CE20683 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257176_S_AT cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative at
ATH1-121501:258125_S_AT cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8610 lipid biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8825 cyclopropane-fatty-acyl-phospholipid synthase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88952 Hypothetical protein F13D12.9 [Caenorhabditis elegans] emb|CAA22134.1| Hypothetical protein F13D12.9 [Caenorhabditis elegans] ref|NP_496501.1| F13D12.9 [Caenorhabditis elegans] 0.0
blast CAE59708 Hypothetical protein CBG03140 [Caenorhabditis briggsae] 0.0
blast XP_638909 hypothetical protein DDB0185725 [Dictyostelium discoideum] gb|EAL65538.1| hypothetical protein DDB0185725 [Dictyostelium discoideum] 7.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR003333 EMBL-EBI Cyclopropane-fatty-acyl-phospholipid synthase 7.0E-37
Sequence
Target Sequence 
>C. ELEGANS:180072_S_AT
gttggggagctgctgcaattcgtgctgttcagagatccggctgcaagtggactggtatca
caatctctaaagaacaactcgagtggggacagaagaaggtggtggaggcagggcttgagg
gacggattgagctgaagttccaggattatcgattggtcaaggagaagtacacccgcgtcg
tgtcaatcgagatgatcgaagctgtcggtgagaagtaccttcctcaatatttccaaatca
tcaacgatgttttgaccgatggtggaatcgccgctcttcaggccatcacttgtccagacg
cctattacgatcagtaccgttcgtcttctgatttcattaagaagtacatcttccctggag
gtcatctgccatcgctcggtgccatttcgcaatccctcccgaagaccttgaaacagaccg
atctattcagtatgggacatcattattcgatgactttggagcattggttcttcgcctgga
tgaaagccaaggatgagatcgaaaagatgaacttgccattcggcttccatcgcagatggc
agttctacttctgtctctgtgcggctctctttgctcacgatcacatcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGGGAGCTGCTGCAATTCGTGC 216 437 989 Antisense
GAGATCCGGCTGCAAGTGGACTGGT 351 393 1020 Antisense
ACCCGCGTCGTGTCAATCGAGATGA 678 89 1159 Antisense
GAGAAGTACCTTCCTCAATATTTCC 555 391 1198 Antisense
ACTTGTCCAGACGCCTATTACGATC 329 97 1276 Antisense
TACCGTTCGTCTTCTGATTTCATTA 660 649 1303 Antisense
AGTACATCTTCCCTGGAGGTCATCT 94 59 1331 Antisense
TCCCTCCCGAAGACCTTGAAACAGA 647 595 1381 Antisense
ATGAACTTGCCATTCGGCTTCCATC 320 43 1495 Antisense
AGATGGCAGTTCTACTTCTGTCTCT 681 67 1522 Antisense
TCTCTTTGCTCACGATCACATCGAT 660 611 1554 Antisense
Sequence Source Affymetrix Proprietary Database