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[180071_at]

Description W10D9.5 /REP_DB=WormBase Gene ID /WP=CE14794 /TR=O17287 /GB=AAB71053.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 32      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 13      6grp_total > 21      4grp_total > 58      6grp_highest_sub > 02_03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2783
1 2 3 4 range
A 3061.5
(-0.2)
P 		4481.1
(3)
P 		4192.5
(2.3)
P 		1845.7
(-3)
P 		2635
B 2783.5
(-1.8)
P 		3849.1
(1)
P 		4628.6
(3)
P 		2300
(-3)
P 		2329
C 3179.5
(-0.8)
P 		4178.4
(3)
P 		4132.5
(2.8)
P 		2599.8
(-3)
P 		1579
avr 3008.2
(-0.8) 		4169.5
(2.6) 		4317.9
(3) 		2248.5
(-3) 		2069

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1508
1 2 3 4 5 6 range
A 2539.4
(-0.3)
P 		3267.1
(2.9)
P 		3290.5
(3)
P 		3224.8
(2.7)
P 		2065.1
(-2.4)
P 		1932.8
(-3)
P 		1358
B 2497.7
(-0.1)
P 		3237.9
(3)
P 		3196.7
(2.8)
P 		2238.3
(-1.1)
P 		2406.5
(-0.4)
P 		1782.7
(-3)
P 		1455
C 2715.1
(1.1)
P 		3086.6
(2.8)
P 		3126.1
(3)
P 		2161.6
(-1.4)
P 		2155.1
(-1.4)
P 		1813.2
(-3)
P 		1313
avr 2584.1
(0.3) 		3197.2
(3) 		3204.4
(3) 		2541.6
(0.1) 		2208.9
(-1.4) 		1842.9
(-3) 		1362
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1170
1 2 3 4 range
A 1114.7
(3)
P 		972.7
(2)
P 		1096
(2.9)
P 		270.2
(-3)
P 		845
B 887.6
(1.1)
P 		950.6
(1.7)
P 		1072.6
(3)
P 		490.1
(-3)
P 		583
C 1052.5
(0.7)
P 		1201.3
(1.6)
P 		1440.3
(3)
P 		438.4
(-3)
P 		1002
avr 1018.3
(1.6) 		1041.5
(1.8) 		1203
(3) 		399.6
(-3) 		803

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 727
1 2 3 4 5 6 range
A 468.1
(-3)
P 		1161.9
(3)
P 		716.6
(-0.9)
P 		817.9
(0)
P 		623.1
(-1.7)
P 		470.6
(-3)
P 		694
B 869.1
(0.4)
P 		1077.8
(3)
P 		776.3
(-0.7)
P 		592.8
(-3)
P 		977.7
(1.8)
P 		664.7
(-2.1)
P 		485
C 1006.4
(3)
P 		941.8
(2.3)
P 		795.6
(0.8)
P 		434.7
(-3)
P 		697.4
(-0.2)
P 		607
(-1.2)
P 		572
avr 781.2
(-0.5) 		1060.5
(3) 		762.8
(-0.7) 		615.1
(-2.6) 		766.1
(-0.7) 		580.8
(-3) 		480
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180071_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4868
Sequence Type Exemplar sequence
Representative Public ID W10D9.5 NCBI
Target Description W10D9.5 /REP_DB=WormBase Gene ID /WP=CE14794 /TR=O17287 /GB=AAB71053.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061340(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061340 NCBI Caenorhabditis elegans W10D9.5 (W10D9.5) mRNA, complete cds. 11/11 None
SNAP00000024352 ENSEMBL cdna:SNAP chromosome:CEL140:II:456219:470474:-1 9/11 None
GENEFINDER00000024353 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:468509:470469:-1 11/11 None
W10D9.5.1 ENSEMBL cdna:known chromosome:CEL140:II:467983:470474:-1 gene:W10D9.5 11/11 None
W10D9.5.3 ENSEMBL cdna:known chromosome:CEL140:II:468369:470474:-1 gene:W10D9.5 11/11 None
W10D9.5.2 ENSEMBL cdna:known chromosome:CEL140:II:468373:470481:-1 gene:W10D9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:468508-470469(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W10D9.5
Entrez Gene 173436 Entrez gene
SwissProt O17287 EMBL-EBI
WormBase CE14794 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5741 mitochondrial outer membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15450 protein translocase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB71054 Hypothetical protein W10D9.4 [Caenorhabditis elegans] ref|NP_493740.1| W10D9.4 [Caenorhabditis elegans] 0.0
blast CAE62881 Hypothetical protein CBG07067 [Caenorhabditis briggsae] 2.0E-89
blast AAB71053 Hypothetical protein W10D9.5 [Caenorhabditis elegans] ref|NP_493741.1| W10D9.5 [Caenorhabditis elegans] 2.0E-55
blast CAE62880 Hypothetical protein CBG07066 [Caenorhabditis briggsae] 5.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR003958 EMBL-EBI Transcription factor CBF/NF-Y/archaeal histone 2.3E-31
Sequence
Target Sequence 
>C. ELEGANS:180071_AT
ggcactggttcgtgacgatttcgacgatattccagactcggaaattcatgagacaattgt
tgagcgaatcgaaggattaggggaaatgttcccagatgcacttcgttcagcagttcattc
aactgttgattggtcgatttggggtgttaagggagtgttttcccttacaaaaagcacaat
ttgggttgtatctacaacgtcattgatcgccttccttccatacattatcgaaaaggaacg
aagtgatttggaaaagactcaagtggctcagcaacgtcaaatgcttctcggaccatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCACTGGTTCGTGACGATTTCGAC 353 535 15 Antisense
GATTTCGACGATATTCCAGACTCGG 633 427 31 Antisense
GGGGAAATGTTCCCAGATGCACTTC 178 497 94 Antisense
GATGCACTTCGTTCAGCAGTTCATT 214 413 109 Antisense
GTTGATTGGTCGATTTGGGGTGTTA 494 415 139 Antisense
TGTTTTCCCTTACAAAAAGCACAAT 504 483 170 Antisense
AAAGCACAATTTGGGTTGTATCTAC 652 123 185 Antisense
ATCTACAACGTCATTGATCGCCTTC 152 33 204 Antisense
GAAAAGACTCAAGTGGCTCAGCAAC 38 355 265 Antisense
GGCTCAGCAACGTCAAATGCTTCTC 43 539 279 Antisense
AACGTCAAATGCTTCTCGGACCATC 215 145 287 Antisense
Sequence Source Affymetrix Proprietary Database