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[180070_s_at]

Description F10G7.9 /REP_DB=WormBase Gene ID /WP=CE04367 /TR=Q19327 /GB=AAA81129.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 72      6grp_total > 39      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 292
1 2 3 4 range
A 519.5
(3)
P 		238
(-2.9)
P 		233.2
(-3)
P 		447.7
(1.5)
P 		286
B 510.7
(3)
P 		291.9
(-1.6)
P 		227.4
(-3)
P 		476.2
(2.3)
P 		283
C 476.9
(3)
P 		261.7
(-3)
P 		272.7
(-2.7)
P 		361.2
(-0.2)
P 		215
avr 502.4
(3) 		263.9
(-2.5) 		244.4
(-3) 		428.4
(1.3) 		258

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 316
1 2 3 4 5 6 range
A 340.2
(-1.6)
P 		559
(3)
P 		270.8
(-3)
P 		432.5
(0.4)
P 		469.1
(1.1)
P 		426.9
(0.2)
P 		288
B 527.7
(3)
P 		398.2
(0.3)
P 		243.1
(-3)
P 		468.4
(1.7)
P 		497.8
(2.4)
P 		442
(1.2)
P 		285
C 371.7
(-2.6)
P 		504.8
(3)
P 		404.7
(-1.2)
P 		363.2
(-3)
P 		382.3
(-2.2)
P 		480.6
(2)
P 		142
avr 413.2
(0.5) 		487.3
(3) 		306.2
(-3) 		421.4
(0.8) 		449.7
(1.8) 		449.8
(1.8) 		181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 189.1
(3)
P 		51.7
(-3)
P 		61
(-2.6)
P 		65.5
(-2.4)
P 		137
B 162.9
(3)
P 		72.1
(-1.9)
P 		52.7
(-3)
P 		101.5
(-0.3)
P 		110
C 157.9
(3)
P 		75.2
(-2.1)
P 		95.1
(-0.9)
P 		60.9
(-3)
P 		97
avr 170
(3) 		66.3
(-3) 		69.6
(-2.8) 		76
(-2.4) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 62.7
(-2.8)
P 		198.8
(3)
P 		59
(-3)
P 		109.7
(-0.8)
P 		141.5
(0.5)
P 		103.9
(-1.1)
P 		140
B 183.6
(2.2)
P 		132.5
(0.1)
P 		59
(-3)
P 		124.1
(-0.3)
P 		202.3
(3)
P 		164.8
(1.4)
P 		143
C 137.8
(1.4)
P 		154
(2.5)
P 		103
(-1)
P 		73
(-3)
P 		123.7
(0.5)
P 		160.9
(3)
P 		88
avr 128
(0.7) 		161.8
(3) 		73.7
(-3) 		102.3
(-1.1) 		155.8
(2.6) 		143.2
(1.7) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180070_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4476
Sequence Type Exemplar sequence
Representative Public ID F10G7.9 NCBI
Target Description F10G7.9 /REP_DB=WormBase Gene ID /WP=CE04367 /TR=Q19327 /GB=AAA81129.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062437, NM_182184
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000005196 ENSEMBL cdna:SNAP chromosome:CEL140:II:4703658:4706349:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182184 8/11 Cross Hyb Matching Probes None
NM_062437 8/11 Cross Hyb Matching Probes None
GENEFINDER00000005212 8/11 Cross Hyb Matching Probes None
F10G7.9b.1 8/11 Cross Hyb Matching Probes A 
F10G7.9b.2 8/11 Cross Hyb Matching Probes A 
F10G7.9a 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4703552-4706533(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494838 F10G7.9a [Caenorhabditis elegans] gb|AAN65325.1| Hypothetical protein F10G7.9a [Caenorhabditis elegans] 0.0
blast A88131 protein F10G7.9 [imported] - Caenorhabditis elegans 0.0
blast NP_871984 F10G7.9b [Caenorhabditis elegans] gb|AAN65326.1| Hypothetical protein F10G7.9b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180070_S_AT
tcccactcctgatttgattcttaacgatgttgtcagtgatccaatcgtaaatcaagctgc
tgctcgagaggctgctttagacaaagagcagtcacttcgtaaacgtctgttggacaaatt
tggaagaactggaaatagtccagatgttacgtcagtggtctcatcatctatacctgatcg
tcccgaacaatgtcgtacattgttactcaaaatgtgcaagttcgaacttaatggaagatg
tgagcggccacgggattgtaaacatcttcatcttcacgacgttactgatgctgaacaaca
agcacaacttctcgaaggcctattccgcgaagcttttaaatacaacgaatccgacatagg
ttcttctacacgccgattattctctgttatacttcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCACTCCTGATTTGATTCTTAAC 655 597 1701 Antisense
ATCAAGCTGCTGCTCGAGAGGCTGC 321 27 1751 Antisense
TTACGTCAGTGGTCTCATCATCTAT 509 683 1847 Antisense
TCATCATCTATACCTGATCGTCCCG 215 621 1861 Antisense
GATCGTCCCGAACAATGTCGTACAT 403 415 1876 Antisense
AGATGTGAGCGGCCACGGGATTGTA 501 67 1936 Antisense
TCTTCATCTTCACGACGTTACTGAT 243 617 1965 Antisense
ACAACTTCTCGAAGGCCTATTCCGC 389 111 2004 Antisense
GAATCCGACATAGGTTCTTCTACAC 263 329 2047 Antisense
TCTTCTACACGCCGATTATTCTCTG 320 617 2062 Antisense
CGATTATTCTCTGTTATACTTCCCC 61 249 2074 Antisense
Sequence Source Affymetrix Proprietary Database