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[180069_s_at]

Description F44F1.6A /REP_DB=WormBase Gene ID /WP=CE23728 /TR=Q9U3F0 /GB=CAB54248.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 09      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 2.6
(-2.9)
A 		2
(-3)
A 		5.2
(-2.6)
A 		56.5
(3)
A 		55
B 2.4
(-2)
A 		3.5
(-0.2)
A 		1.8
(-3)
A 		5.5
(3)
A 		4
C 2
(-3)
A 		9.8
(0.7)
A 		13.7
(2.6)
A 		14.6
(3)
A 		13
avr 2.3
(-3) 		5.1
(-2.3) 		6.9
(-1.8) 		25.5
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 3.5
(-2.8)
A 		2.4
(-3)
A 		3.6
(-2.7)
A 		3.6
(-2.7)
A 		3.3
(-2.8)
A 		28.8
(3)
A 		26
B 8.8
(0.3)
A 		1.1
(-2.9)
A 		15.5
(3)
A 		1
(-2.9)
A 		0.8
(-3)
A 		2.6
(-2.3)
A 		15
C 1.3
(-3)
A 		3.9
(-2.7)
A 		11.8
(-1.7)
A 		1.5
(-3)
A 		22.4
(-0.3)
A 		48.8
(3)
A 		48
avr 4.5
(-2.4) 		2.5
(-2.9) 		10.3
(-1) 		2
(-3) 		8.8
(-1.3) 		26.7
(3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.9
(-2.6)
A 		0.4
(-3)
A 		1.3
(-2.3)
A 		8.3
(3)
A 		8
B 0.8
(0)
A 		0.9
(0.8)
A 		0.4
(-3)
A 		1.2
(3)
A 		1
C 0.7
(-3)
A 		2.8
(0.1)
A 		4.8
(3)
A 		2.5
(-0.4)
A 		4
avr 0.8
(-3) 		1.4
(-1.9) 		2.2
(-0.4) 		4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.9
(-2.7)
A 		0.8
(-2.8)
A 		0.9
(-2.7)
A 		1
(-2.6)
A 		7
(3)
A 		6
B 3.1
(1.8)
A 		0.4
(-2.8)
A 		3.8
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		1
(-1.8)
A 		4
C 0.5
(-2.9)
A 		1.2
(-2.7)
A 		3
(-2)
A 		0.3
(-3)
A 		7.2
(-0.4)
A 		16.3
(3)
A 		16
avr 1.4
(-2.3) 		0.8
(-2.8) 		2.5
(-1.4) 		0.5
(-3) 		2.8
(-1.2) 		8.1
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180069_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2449
Sequence Type Exemplar sequence
Representative Public ID F44F1.6A NCBI
Target Description F44F1.6A /REP_DB=WormBase Gene ID /WP=CE23728 /TR=Q9U3F0 /GB=CAB54248.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060928(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060928 NCBI Caenorhabditis elegans F44F1.6a (F44F1.6) mRNA, complete cds. 11/11 A 
SNAP00000015373 ENSEMBL cdna:SNAP chromosome:CEL140:I:13269365:13270846:-1 11/11 None
GENEFINDER00000015380 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13269365:13270846:-1 11/11 None
F44F1.6a ENSEMBL cdna:known chromosome:CEL140:I:13269052:13270846:-1 gene:F44F1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173189 2 1 NM_060928 180069_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13269295-13270777(-) 100.0 100.0
Public Domain and Genome References
Ensembl F44F1.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54248 Hypothetical protein F44F1.6a [Caenorhabditis elegans] ref|NP_493329.1| F44F1.6a [Caenorhabditis elegans] 0.0
blast F87986 protein F44F1.6 [imported] - Caenorhabditis elegans 0.0
blast CAB03104 Hypothetical protein F44F1.4 [Caenorhabditis elegans] ref|NP_493331.1| F44F1.4 [Caenorhabditis elegans] 1.0E-155
Sequence
Target Sequence 
>C. ELEGANS:180069_S_AT
gatatcgagcagtacaccttcaacccagataccaatgcattcgaacaagtctattgtaaa
gaacttgtctacgatccaaatcgattcaacagagcttcgttggctgcttatgttttccca
gagaacgttgcgaataatggaactgtgatcattagcagagatgtttacgaagtaattcag
aaggaaaaatattccatcgttacggatgagtatgttgtacttccagcggctccagtgaag
acatttgctgtgagaattcaagaagagaaacagaagaagctggatgaagaggaacaacag
aaggtgttgaagactcaagaactggagaaacaaaaggatggacagattgttataatggaa
ttggaaatgaaagaaatgacaacgttattagaagaaaaagatacgaggatcaagatgcat
gtggaaaaacatcgtgataaggaatgtgaactggagctagttagaaggaagttggacgac
tgtgttgtgagaatgcagggagcatttgaacgtgatatcaaattggaagaagctaaagtc
caggcatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATCGAGCAGTACACCTTCAACC 95 427 889 Antisense
ACCTTCAACCCAGATACCAATGCAT 592 85 904 Antisense
GATACCAATGCATTCGAACAAGTCT 557 423 916 Antisense
TTGTAAAGAACTTGTCTACGATCCA 358 707 942 Antisense
GATCCAAATCGATTCAACAGAGCTT 230 415 961 Antisense
AACAGAGCTTCGTTGGCTGCTTATG 150 137 976 Antisense
GTTGGCTGCTTATGTTTTCCCAGAG 109 437 987 Antisense
GTTTTCCCAGAGAACGTTGCGAATA 371 447 1000 Antisense
AATATTCCATCGTTACGGATGAGTA 495 169 1076 Antisense
GGAAGTTGGACGACTGTGTTGTGAG 374 531 1355 Antisense
GAAGAAGCTAAAGTCCAGGCATCGA 288 341 1414 Antisense
Sequence Source Affymetrix Proprietary Database