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[180068_s_at]

Description B0334.11 /REP_DB=WormBase Gene ID /WP=CE19661 /TR=Q9XVW6 /GB=CAA91380.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 92      6grp_total > 96      4grp_total > 05      6grp_highest_sub > In      6grp_cgc > 78      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 276
1 2 3 4 range
A 311.1
(0.3)
P 		160.9
(-3)
P 		189.8
(-2.4)
P 		436.7
(3)
P 		276
B 277.4
(-2.1)
P 		278.4
(-2)
P 		252.1
(-3)
P 		415.9
(3)
P 		164
C 313.3
(3)
P 		260.4
(-3)
P 		288.1
(0.1)
P 		309.2
(2.5)
P 		53
avr 300.6
(-0.4) 		233.2
(-3) 		243.3
(-2.6) 		387.3
(3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 268
1 2 3 4 5 6 range
A 192.4
(-3)
P 		270
(-0.8)
P 		323.7
(0.7)
P 		337
(1.1)
P 		363.6
(1.8)
P 		405.7
(3)
P 		213
B 287
(-2)
P 		283.3
(-2.1)
P 		261.9
(-3)
P 		329.6
(-0.2)
P 		408.4
(3)
P 		404
(2.8)
P 		147
C 279.2
(-3)
P 		279.4
(-3)
P 		303
(-2.2)
P 		319.5
(-1.7)
P 		393.1
(0.8)
P 		460.8
(3)
P 		182
avr 252.9
(-3) 		277.6
(-2.1) 		296.2
(-1.5) 		328.7
(-0.3) 		388.4
(1.8) 		423.5
(3) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 113.3
(3)
P 		34.9
(-3)
P 		49.6
(-1.9)
P 		63.9
(-0.8)
P 		78
B 88.5
(3)
P 		68.8
(-0.9)
P 		58.4
(-3)
P 		88.6
(3)
P 		30
C 103.7
(3)
P 		74.9
(-0.3)
P 		100.4
(2.6)
P 		52.1
(-3)
P 		52
avr 101.8
(3) 		59.5
(-3) 		69.5
(-1.6) 		68.2
(-1.8) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 35.5
(-3)
P 		96
(1.9)
P 		70.5
(-0.2)
P 		85.5
(1)
P 		109.7
(3)
P 		98.8
(2.1)
P 		74
B 99.9
(-0.9)
P 		94.3
(-1.2)
P 		63.6
(-3)
P 		87.3
(-1.6)
P 		165.9
(3)
P 		150.7
(2.1)
P 		102
C 103.5
(-0.4)
P 		85.3
(-1.6)
P 		77.1
(-2.1)
P 		64.2
(-3)
P 		127.2
(1.2)
P 		154.3
(3)
P 		90
avr 79.6
(-2.1) 		91.9
(-1) 		70.4
(-3) 		79
(-2.2) 		134.3
(3) 		134.6
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180068_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2950
Sequence Type Exemplar sequence
Representative Public ID B0334.11 NCBI
Target Description B0334.11 /REP_DB=WormBase Gene ID /WP=CE19661 /TR=Q9XVW6 /GB=CAA91380.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064055(11), NM_182110(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064055 NCBI Caenorhabditis elegans abnormal OOCyte formation family member (ooc-3) (ooc-3) mRNA, complete cds. 11/11 None
NM_182110 NCBI Caenorhabditis elegans abnormal OOCyte formation family member (ooc-3) (ooc-3) mRNA, complete cds. 11/11 None
SNAP00000019014 ENSEMBL cdna:SNAP chromosome:CEL140:II:11493369:11495219:-1 11/11 None
GENEFINDER00000019034 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11493369:11495219:-1 11/11 None
B0334.11a ENSEMBL cdna:known chromosome:CEL140:II:11493136:11495219:-1 gene:B0334.11 11/11 None
B0334.11b ENSEMBL cdna:known chromosome:CEL140:II:11493369:11495219:-1 gene:B0334.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11493365-11495216(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0334.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91380 Hypothetical protein B0334.11a [Caenorhabditis elegans] ref|NP_496456.1| abnormal OOCyte formation family member (ooc-3) [Caenorhabditis elegans] 0.0
blast CAD59139 Hypothetical protein B0334.11b [Caenorhabditis elegans] ref|NP_871910.1| abnormal OOCyte formation family member (ooc-3) [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496456.1 4 143-165,175-193,251-273,293-315
NP_871910.1 4 141-163,173-191,249-271,291-313
B0334.11a 4 143-165,175-193,251-273,293-315
B0334.11b 4 141-163,173-191,249-271,291-313
SNAP00000019014 4 141-163,173-191,249-271,291-313
GENEFINDER00000019034 4 141-163,173-191,249-271,291-313
Sequence
Target Sequence 
>C. ELEGANS:180068_S_AT
gagtcaaaccatatcgattttccacgagatttctatcatcgaagtgttttctgagactat
ttccggaggattctttgcgtttttttctggttctgcgaagcactttaatttattcttcag
aaatctatatgacggtgctccattgatagctcaaatcgtgatgacaatcttccttgttct
aatgcttggagctattcgaactccattctttagttatgaaccgatttggctcaacttctg
tagttccagtattggaaaaatcgcgggttggctggatggagaacctccacagcagccagc
tccccaactgcttataacagcaaaagagatgaaaagattagaacaggcaagaaataaaaa
acccgaaatgataagttatccaacatcggagcgagaagacgtcgtgagtggaagcgaaaa
tgggaacgagaaaaagagcgacaacgagagagaggagtcgatgaagatggaagaagactc
agctccggtggaatcgtcgctagaagacgatctgagcttactcggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCAAACCATATCGATTTTCCAC 646 399 747 Antisense
GATTTTCCACGAGATTTCTATCATC 85 429 762 Antisense
GTTTTCTGAGACTATTTCCGGAGGA 399 447 792 Antisense
CTTTGCGTTTTTTTCTGGTTCTGCG 53 223 819 Antisense
GACGGTGCTCCATTGATAGCTCAAA 558 377 877 Antisense
CAATCTTCCTTGTTCTAATGCTTGG 554 181 911 Antisense
GAGCTATTCGAACTCCATTCTTTAG 88 387 935 Antisense
GGCTCAACTTCTGTAGTTCCAGTAT 700 537 974 Antisense
AGCTCCCCAACTGCTTATAACAGCA 262 81 1044 Antisense
AAGACTCAGCTCCGGTGGAATCGTC 417 153 1220 Antisense
GAAGACGATCTGAGCTTACTCGGAG 573 339 1249 Antisense
Sequence Source Affymetrix Proprietary Database