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[180067_at]

Description C18E3.2 /REP_DB=WormBase Gene ID /WP=CE08311 /TR=O02101 /GB=AAB52943.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 81      6grp_total > 98      4grp_total > 52      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 237.4
(3)
P 		233.9
(2.7)
P 		233.9
(2.7)
P 		171
(-3)
P 		66
B 277.7
(3)
P 		267.5
(1.2)
P 		253.2
(-1.3)
P 		243.5
(-3)
P 		34
C 252.7
(1.4)
P 		277.9
(3)
P 		255.7
(1.6)
P 		182.7
(-3)
P 		95
avr 255.9
(2.6) 		259.8
(3) 		247.6
(1.8) 		199.1
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 159.5
(-3)
P 		221.5
(-0.6)
P 		238.6
(0.1)
P 		314.8
(3)
P 		215.5
(-0.8)
P 		300.4
(2.4)
P 		155
B 230.4
(-1.6)
P 		293.8
(1.3)
P 		238.3
(-1.2)
P 		198.5
(-3)
P 		302.9
(1.7)
P 		331.7
(3)
P 		133
C 355.8
(3)
P 		245.5
(-3)
P 		252.7
(-2.6)
P 		250
(-2.8)
P 		352.3
(2.8)
P 		310.6
(0.5)
P 		110
avr 248.6
(-2.5) 		253.6
(-2.1) 		243.2
(-3) 		254.4
(-2.1) 		290.2
(1) 		314.2
(3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 86.4
(3)
P 		50.8
(-0.5)
P 		61.1
(0.5)
P 		25
(-3)
P 		61
B 88.6
(3)
P 		66.1
(-0.7)
P 		58.7
(-1.9)
P 		51.9
(-3)
P 		37
C 83.6
(2.4)
P 		79.9
(2.1)
P 		89.1
(3)
P 		30.8
(-3)
P 		58
avr 86.2
(3) 		65.6
(0.5) 		69.6
(1) 		35.9
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 29.4
(-3)
P 		78.8
(2.9)
P 		52
(-0.3)
P 		79.8
(3)
P 		65
(1.2)
P 		73.1
(2.2)
P 		50
B 80.2
(-0.7)
P 		97.8
(0.8)
P 		57.9
(-2.6)
P 		52.6
(-3)
P 		123.1
(2.9)
P 		123.7
(3)
P 		71
C 131.9
(3)
P 		74.9
(-1.2)
P 		64.3
(-2)
P 		50.3
(-3)
P 		114
(1.7)
P 		104
(0.9)
P 		82
avr 80.5
(0.2) 		83.8
(0.6) 		58.1
(-3) 		60.9
(-2.6) 		100.7
(3) 		100.3
(2.9) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180067_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1373
Sequence Type Exemplar sequence
Representative Public ID C18E3.2 NCBI
Target Description C18E3.2 /REP_DB=WormBase Gene ID /WP=CE08311 /TR=O02101 /GB=AAB52943.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058928(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058928 NCBI Caenorhabditis elegans C18E3.2 (C18E3.2) mRNA, complete cds. 11/11 None
SNAP00000003658 ENSEMBL cdna:SNAP chromosome:CEL140:I:4203462:4212514:1 11/11 None
GENEFINDER00000003670 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4210664:4212514:1 11/11 None
C18E3.2.1 ENSEMBL cdna:known chromosome:CEL140:I:4210979:4212668:1 gene:C18E3.2 11/11 None
C18E3.2.2 ENSEMBL cdna:known chromosome:CEL140:I:4210981:4212668:1 gene:C18E3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4210663-4212514(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18E3.2
Entrez Gene 172018 Entrez gene
SwissProt O02101 EMBL-EBI
WormBase CE30249 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250218_AT SWIB complex BAF60b domain-containing protein at
CANINE_2:CFAAFFX.13189.1.S1_AT similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin d1 isoform a cfa
DROSOPHILA_2:1634157_AT Brahma associated protein 60kD dm
DROSGENOME1:153648_AT Brahma associated protein 60kD dm
CHICKEN:GGA.9992.1.S1_AT similar to SMARCD1 protein gga
CHICKEN:GGAAFFX.21858.1.S1_AT similar to SMARCD1 protein gga
CHICKEN:GGAAFFX.3872.1.S1_AT similar to SMARCD1 protein gga
HG-U133A_2:203183_S_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 hs
HG-U133A:203183_S_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 hs
HG-U133_PLUS_2:203183_S_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 hs
HG-FOCUS:203183_S_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 hs
HG-U95AV2:454_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 hs
HC-G110:454_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 hs
HUGENEFL:U66617_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 hs
U133_X3P:G4507082_3P_A_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 hs
U133_X3P:HS.79335.1.S2_3P_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 hs
HG-U133A_2:209518_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 hs
HG-U133_PLUS_2:209518_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 hs
HG-U133A:209518_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 hs
HG-U95AV2:37753_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 hs
MU11KSUBA:U66620_S_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 mm
MG-U74AV2:101405_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 mm
MOE430A:1448913_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 mm
MOUSE430A_2:1448913_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 mm
MOUSE430_2:1448913_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 mm
MOUSE430_2:1427659_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 (Smarcd1), mRNA mm
MOUSE430A_2:1427659_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 (Smarcd1), mRNA mm
MOE430A:1427659_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 (Smarcd1), mRNA mm
MU19KSUBA:TC19174_S_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 (Smarcd1), mRNA mm
RAE230A:1371767_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 (predicted) rn
RAT230_2:1371767_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 (predicted) rn
RG-U34C:RC_AI172473_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAB52943 Hypothetical protein C18E3.2 [Caenorhabditis elegans] ref|NP_491329.2| C18E3.2 [Caenorhabditis elegans] 0.0
blast CAE66812 Hypothetical protein CBG12176 [Caenorhabditis briggsae] 0.0
blast AAB52941 Hypothetical protein C18E3.3 [Caenorhabditis elegans] ref|NP_491327.1| C18E3.3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003121 EMBL-EBI SWIB complex, BAF60b 1.4E-33
Pfam IPR003121 EMBL-EBI SWIB complex, BAF60b 1.4E-33
Pfam IPR003121 EMBL-EBI SWIB complex, BAF60b 1.4E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000003670 1 48-67
Sequence
Target Sequence 
>C. ELEGANS:180067_AT
gaaactcgtccgaagattatcgaagctctctggcagtacatcaaaactcatggacttcaa
gatcctcaagaacgggacattatcaattgtgatacatttttgagtcaatgtttcggagtg
aatagaatgagatttatggaagtgccaaacaaattgcatcaactacttcaacaaactgat
ccattggagttcaatcatataattcaacgaccaaaagaagggcaggaacaagtatcaact
tgctacgacattgatgttgagatggaagatccagtgaaacagtttatgcatactttcgtt
catagtccaggacttgccaatgatattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTCGTCCGAAGATTATCGAAG 493 357 967 Antisense
GATTATCGAAGCTCTCTGGCAGTAC 550 429 981 Antisense
CGAAGCTCTCTGGCAGTACATCAAA 622 253 987 Antisense
AACTCATGGACTTCAAGATCCTCAA 58 141 1011 Antisense
AGATCCTCAAGAACGGGACATTATC 606 63 1026 Antisense
GAAGTGCCAAACAAATTGCATCAAC 109 337 1105 Antisense
ACTTCAACAAACTGATCCATTGGAG 36 101 1131 Antisense
AAGTATCAACTTGCTACGACATTGA 278 155 1196 Antisense
AACAGTTTATGCATACTTTCGTTCA 357 137 1244 Antisense
ATACTTTCGTTCATAGTCCAGGACT 606 21 1256 Antisense
GTCCAGGACTTGCCAATGATATTCA 405 477 1271 Antisense
Sequence Source Affymetrix Proprietary Database