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[180066_at]

Description E03H4.12 /REP_DB=WormBase Gene ID /WP=CE09138 /TR=O17751 /GB=CAB04033.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 03      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 6.7
(-2.9)
A 		8
(-2.8)
A 		5.3
(-3)
A 		85.8
(3)
A 		81
B 21.7
(3)
A 		9
(-3)
A 		11.5
(-1.8)
A 		11.2
(-2)
A 		13
C 22.4
(-1.7)
A 		10.8
(-3)
A 		10.5
(-3)
A 		65.6
(3)
A 		55
avr 16.9
(-2) 		9.3
(-3) 		9.1
(-3) 		54.2
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 19.6
(1.3)
A 		7.9
(-2.1)
A 		23.5
(2.4)
A 		9.3
(-1.7)
A 		4.7
(-3)
A 		25.6
(3)
A 		21
B 11.2
(-1.6)
A 		4.9
(-3)
A 		5.8
(-2.8)
A 		10.2
(-1.9)
A 		9.4
(-2)
A 		32.8
(3)
A 		28
C 8.9
(-1.9)
A 		13.8
(-0.7)
A 		4.1
(-3)
A 		29.7
(3)
A 		4.4
(-2.9)
A 		9.7
(-1.7)
A 		26
avr 13.2
(-0.5) 		8.9
(-2) 		11.1
(-1.2) 		16.4
(0.7) 		6.2
(-3) 		22.7
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.4
(-2.5)
A 		1.7
(-2.8)
A 		1.4
(-3)
A 		12.6
(3)
A 		11
B 6.9
(3)
A 		2.2
(-3)
A 		2.7
(-2.4)
A 		2.4
(-2.7)
A 		5
C 7.4
(0.2)
A 		3.1
(-3)
A 		3.7
(-2.6)
A 		11.1
(3)
A 		8
avr 5.6
(0.1) 		2.3
(-3) 		2.6
(-2.7) 		8.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.6
(-0.3)
A 		2.8
(-1.3)
A 		5.1
(1.6)
A 		2.3
(-1.9)
A 		1.4
(-3)
A 		6.2
(3)
A 		5
B 3.9
(-1.6)
A 		1.6
(-2.9)
A 		1.4
(-3)
A 		2.7
(-2.3)
A 		3.8
(-1.7)
A 		12.2
(3)
A 		11
C 3.3
(-0.2)
A 		4.2
(0.8)
A 		1
(-3)
A 		6
(3)
A 		1.4
(-2.5)
A 		3.2
(-0.4)
A 		5
avr 3.6
(-1.3) 		2.9
(-2.2) 		2.5
(-2.6) 		3.7
(-1.2) 		2.2
(-3) 		7.2
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180066_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1954
Sequence Type Exemplar sequence
Representative Public ID E03H4.12 NCBI
Target Description E03H4.12 /REP_DB=WormBase Gene ID /WP=CE09138 /TR=O17751 /GB=CAB04033.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060753(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060753 NCBI Caenorhabditis elegans E03H4.12 (E03H4.12) mRNA, complete cds. 11/11 None
SNAP00000031046 ENSEMBL cdna:SNAP chromosome:CEL140:I:12444283:12445216:1 11/11 None
GENEFINDER00000031053 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12444283:12445406:1 11/11 None
E03H4.12 ENSEMBL cdna:known chromosome:CEL140:I:12444283:12445216:1 gene:E03H4.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12444213-12445147(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E03H4.12
Entrez Gene 184025 Entrez gene
SwissProt O17751 EMBL-EBI
WormBase CE09138 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04033 Hypothetical protein E03H4.12 [Caenorhabditis elegans] ref|NP_493154.1| E03H4.12 [Caenorhabditis elegans] 1.0E-130
blast CAB04033 Hypothetical protein E03H4.12 [Caenorhabditis elegans] ref|NP_493154.1| E03H4.12 [Caenorhabditis elegans] 1.0E-129
blast CAB05617 Hypothetical protein T15D6.7 [Caenorhabditis elegans] ref|NP_493138.1| T15D6.7 [Caenorhabditis elegans] 5.0E-91
blast CAB05617 Hypothetical protein T15D6.7 [Caenorhabditis elegans] ref|NP_493138.1| T15D6.7 [Caenorhabditis elegans] 7.0E-91
blast CAI99629 beta-1,3-glucuronosyltransferase [Caenorhabditis briggsae] 1.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR005027 EMBL-EBI Glycosyl transferase, family 43 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:180066_AT
gacggcgaagaacttgtgcccgccgttcaaaatgttctggaaagatcagggctaccgtat
acctatgtgacgcataaaactgcaaaaggatatcctgcgaaaggatggtatcaacgagat
atggctttgaagatgctgcgaaccaactcttcacaaatcctgggcaatcataagggcgaa
gctgtcgtttattttgcagacgatgataattcgtacgacttgcgactgtttgatgatttt
attagaaatgtgaagaaattgggagtttgggctgttggtttggtcggtggaaccatagtc
gaagctccgaaagttgagaataaaaaagtaacctcattcaatgtcaaatgggagcccagc
cgaccatttgctgttgatatggcaggatttgcaatcaatctcaagtatattttacgttcc
gcagccgtttttggtccaaaatgtcatggaagtggggctccggaaacctgtctacttgag
aaacttggatttgagttggatgatattcagccgtttgggtacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGCGAAGAACTTGTGCCCGCCG 254 377 64 Antisense
TGCCCGCCGTTCAAAATGTTCTGGA 185 585 80 Antisense
GGGCTACCGTATACCTATGTGACGC 672 491 112 Antisense
GAAGATGCTGCGAACCAACTCTTCA 61 339 192 Antisense
AACTCTTCACAAATCCTGGGCAATC 317 141 208 Antisense
GTACGACTTGCGACTGTTTGATGAT 229 459 276 Antisense
GGTGGAACCATAGTCGAAGCTCCGA 111 499 349 Antisense
CCCAGCCGACCATTTGCTGTTGATA 392 259 418 Antisense
TATATTTTACGTTCCGCAGCCGTTT 456 659 469 Antisense
GCTCCGGAAACCTGTCTACTTGAGA 705 295 520 Antisense
GATGATATTCAGCCGTTTGGGTACG 243 409 562 Antisense
Sequence Source Affymetrix Proprietary Database