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[180065_s_at]

Description Y62H9A.5 /REP_DB=WormBase Gene ID /WP=CE19241 /TR=Q9XWS6 /GB=CAA21569.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 27      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 3
(-3)
A 		4
(-0.1)
A 		3
(-3)
A 		5.1
(3)
A 		2
B 3.3
(-3)
A 		4.1
(3)
A 		3.9
(1.5)
A 		4
(2.3)
A 		1
C 3.8
(-1.8)
A 		6.3
(1.3)
A 		2.8
(-3)
A 		7.7
(3)
A 		5
avr 3.4
(-2.5) 		4.8
(1) 		3.2
(-3) 		5.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 724
1 2 3 4 5 6 range
A 20.4
(-2.8)
A 		6.1
(-3)
A 		4.6
(-3)
A 		2.8
(-3)
A 		504.3
(3)
P 		240.7
(-0.2)
P 		502
B 3.8
(-3)
A 		1.9
(-3)
A 		7.6
(-2.9)
A 		2.2
(-3)
A 		600.9
(3)
P 		346.2
(0.4)
P 		599
C 1.7
(-3)
A 		2.3
(-3)
A 		7.8
(-2.9)
A 		5.7
(-3)
A 		725.5
(3)
P 		346
(-0.1)
P 		724
avr 8.6
(-2.9) 		3.4
(-3) 		6.7
(-3) 		3.6
(-3) 		610.2
(3) 		311
(0) 		607
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.1
(3)
A 		0.9
(0)
A 		0.8
(-1.5)
A 		0.7
(-3)
A 		0
B 1
(3)
A 		1
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		0
C 1.2
(-1.5)
A 		1.8
(3)
A 		1
(-3)
A 		1.3
(-0.8)
A 		1
avr 1.1
(1) 		1.2
(3) 		0.9
(-3) 		1
(-1) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 3.8
(-2.9)
A 		2.2
(-2.9)
A 		1
(-3)
A 		0.7
(-3)
A 		152.2
(3)
P 		58.6
(-0.7)
P 		152
B 1.3
(-3)
A 		0.6
(-3)
A 		1.8
(-3)
A 		0.6
(-3)
A 		244.2
(3)
P 		129.1
(0.2)
P 		244
C 0.6
(-3)
A 		0.7
(-3)
A 		2
(-3)
A 		1.1
(-3)
A 		234.7
(3)
P 		115.8
(-0)
P 		234
avr 1.9
(-3) 		1.2
(-3) 		1.6
(-3) 		0.8
(-3) 		210.4
(3) 		101.2
(-0.1) 		210
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180065_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16054
Sequence Type Exemplar sequence
Representative Public ID Y62H9A.5 NCBI
Target Description Y62H9A.5 /REP_DB=WormBase Gene ID /WP=CE19241 /TR=Q9XWS6 /GB=CAA21569.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077585(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077585 NCBI Caenorhabditis elegans Y62H9A.5 (Y62H9A.5) mRNA, complete cds. 11/11 None
SNAP00000025457 ENSEMBL cdna:SNAP chromosome:CEL140:X:11882114:11882803:-1 11/11 None
GENEFINDER00000025469 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11882114:11882803:-1 11/11 None
Y62H9A.5 ENSEMBL cdna:known chromosome:CEL140:X:11882068:11882838:-1 gene:Y62H9A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11882238-11882803(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y62H9A.5
Entrez Gene 181364 Entrez gene
SwissProt Q9XWS6 EMBL-EBI
WormBase CE31124 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21569 Hypothetical protein Y62H9A.5 [Caenorhabditis elegans] ref|NP_509986.2| Y62H9A.5 [Caenorhabditis elegans] 3.0E-65
blast CAE69409 Hypothetical protein CBG15571 [Caenorhabditis briggsae] 2.0E-34
blast CAA21560 Hypothetical protein Y62H9A.3 [Caenorhabditis elegans] ref|NP_509984.1| Y62H9A.3 [Caenorhabditis elegans] 7.0E-27
Sequence
Target Sequence 
>C. ELEGANS:180065_S_AT
ctcatcctcacagttgcgtgcattgccatggtggcagccgacggttacggagccgcctct
gacccatcataccctgctccaggcccatcttacggtggtggtggttacccaatctactct
gatgaggatagtgattctcgggaacacagaagagatttccgtaagctgaaagacttgcac
aaaaccaatgtcgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCATCCTCACAGTTGCGTGCATTG 577 229 22 Antisense
CAGTTGCGTGCATTGCCATGGTGGC 177 207 32 Antisense
GTGCATTGCCATGGTGGCAGCCGAC 159 479 39 Antisense
CCATGGTGGCAGCCGACGGTTACGG 524 259 47 Antisense
AGGCCCATCTTACGGTGGTGGTGGT 256 51 102 Antisense
GTGGTGGTGGTTACCCAATCTACTC 99 489 116 Antisense
GGTTACCCAATCTACTCTGATGAGG 354 507 124 Antisense
GGATAGTGATTCTCGGGAACACAGA 551 509 147 Antisense
GAACACAGAAGAGATTTCCGTAAGC 702 349 163 Antisense
TTCCGTAAGCTGAAAGACTTGCACA 173 697 178 Antisense
GACTTGCACAAAACCAATGTCGTTG 346 371 193 Antisense
Sequence Source Affymetrix Proprietary Database