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[180064_at]

Description C54D2.1 /REP_DB=WormBase Gene ID /WP=CE02558 /TR=Q18839 /GB=AAA79200.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      6grp_highest_nonorm > 92      6grp_total > 94      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 601
1 2 3 4 range
A 51.5
(-3)
A 		641.2
(3)
P 		451.7
(1.1)
P 		116.1
(-2.3)
A 		590
B 44.3
(-2.9)
A 		505.8
(3)
P 		444.6
(2.2)
P 		40.2
(-3)
A 		466
C 76.7
(-3)
A 		454.8
(3)
P 		442.4
(2.8)
P 		131.1
(-2.1)
P 		378
avr 57.5
(-3) 		533.9
(3) 		446.2
(1.9) 		95.8
(-2.5) 		476

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 324
1 2 3 4 5 6 range
A 206.1
(-1.6)
P 		259.9
(-0.4)
P 		143.3
(-3)
P 		222.2
(-1.3)
P 		416.2
(3)
P 		370
(2)
P 		273
B 251.3
(-1.5)
P 		250
(-1.5)
P 		180.1
(-3)
P 		255
(-1.4)
P 		467.2
(3)
P 		302.8
(-0.4)
P 		287
C 245.7
(-1.8)
P 		290.4
(-0.6)
P 		199.9
(-3)
P 		229
(-2.2)
P 		430.1
(3)
P 		396.9
(2.1)
P 		230
avr 234.4
(-1.6) 		266.8
(-0.9) 		174.4
(-3) 		235.4
(-1.6) 		437.8
(3) 		356.6
(1.2) 		263
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 18.7
(-2.9)
A 		139.2
(3)
P 		118.1
(2)
P 		17
(-3)
A 		122
B 14.1
(-2.7)
A 		124.9
(3)
P 		103
(1.9)
P 		8.6
(-3)
A 		116
C 25.4
(-2.9)
A 		130.8
(1.9)
P 		154.2
(3)
P 		22.1
(-3)
P 		132
avr 19.4
(-2.8) 		131.6
(3) 		125.1
(2.7) 		15.9
(-3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 38
(-2.6)
P 		92.4
(0.9)
P 		31.2
(-3)
P 		56.4
(-1.4)
P 		125.6
(3)
P 		90.1
(0.7)
P 		94
B 87.4
(-1.2)
P 		83.2
(-1.4)
P 		43.7
(-3)
P 		67.5
(-2)
P 		189.8
(3)
P 		112.9
(-0.2)
P 		146
C 91.1
(-0.1)
P 		88.6
(-0.3)
P 		50.9
(-2.7)
P 		46
(-3)
P 		139.2
(3)
P 		132.8
(2.6)
P 		93
avr 72.2
(-1.3) 		88.1
(-0.5) 		41.9
(-3) 		56.6
(-2.2) 		151.5
(3) 		111.9
(0.8) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180064_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16491
Sequence Type Exemplar sequence
Representative Public ID C54D2.1 NCBI
Target Description C54D2.1 /REP_DB=WormBase Gene ID /WP=CE02558 /TR=Q18839 /GB=AAA79200.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076925(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076925 NCBI Caenorhabditis elegans C54D2.1 (C54D2.1) mRNA, complete cds. 11/11 None
GENEFINDER00000030447 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7842572:7845378:1 11/11 None
C54D2.1 ENSEMBL cdna:known chromosome:CEL140:X:7842572:7845378:1 gene:C54D2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030442 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7842570-7845377(+) 93.47 100.0
Public Domain and Genome References
Gene Title
Ensembl C54D2.1
Entrez Gene 183776 Entrez gene
SwissProt Q18839 EMBL-EBI
WormBase CE02558 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA79200 Hypothetical protein C54D2.1 [Caenorhabditis elegans] ref|NP_509326.1| C54D2.1 [Caenorhabditis elegans] 1.0E-145
blast AAA79200 Hypothetical protein C54D2.1 [Caenorhabditis elegans] ref|NP_509326.1| C54D2.1 [Caenorhabditis elegans] 2.0E-87
blast CAE70310 Hypothetical protein CBG16832 [Caenorhabditis briggsae] 6.0E-75
blast CAE70310 Hypothetical protein CBG16832 [Caenorhabditis briggsae] 1.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.2E-11
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.2E-11
Sequence
Target Sequence 
>C. ELEGANS:180064_AT
cagcgggtcgacatgcttccgctgccacatatttggcgtatttcgttgcaagtgtgggtc
acagttagatccatcacctacttttgggtcgacccacaggccgaccagttcccacctcta
ctaaatcaagcaaatgcacaaacaacaacaaccactgagttagcaaccaccaccaccact
accactgaagcccccacaacaacattttcaaccaccactactccagctccaacaactaca
ttcattatcccaactaccgtggccccaagcagggaagaacccggatgtactccttacaac
tgcgcttgcaacccaatgggatgtggacaagggcaaattgtcagaataaattttgtgatc
cccggtcaacaatgtaactctaacaatcaatgccttgctggatcttactgtaactctgga
acgtgccgatgtgcgaacagttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCGGGTCGACATGCTTCCGCTGC 13 201 541 Antisense
CTTCCGCTGCCACATATTTGGCGTA 47 221 556 Antisense
GGCGTATTTCGTTGCAAGTGTGGGT 511 535 575 Antisense
GATCCATCACCTACTTTTGGGTCGA 670 413 608 Antisense
GTTCCCACCTCTACTAAATCAAGCA 664 441 648 Antisense
CAACTACATTCATTATCCCAACTAC 334 189 773 Antisense
CTACCGTGGCCCCAAGCAGGGAAGA 589 223 794 Antisense
GAAGAACCCGGATGTACTCCTTACA 136 339 814 Antisense
GATCCCCGGTCAACAATGTAACTCT 88 383 897 Antisense
GCCTTGCTGGATCTTACTGTAACTC 344 279 932 Antisense
GAACGTGCCGATGTGCGAACAGTTT 202 347 959 Antisense
Sequence Source Affymetrix Proprietary Database