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[180063_at]

Description F08C6.3 /REP_DB=WormBase Gene ID /WP=CE02592 /TR=Q19201 /GB=AAA68727.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 61      6grp_total > 40      4grp_total > 61      6grp_cgc > 71      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 493.6
(3)
P 		421.9
(0.5)
P 		431.7
(0.9)
P 		320.7
(-3)
P 		173
B 404.1
(2.1)
P 		418.3
(3)
P 		407.2
(2.3)
P 		323.3
(-3)
P 		95
C 482.6
(3)
P 		414.1
(0.5)
P 		446.7
(1.7)
P 		320.4
(-3)
P 		162
avr 460.1
(3) 		418.1
(1.2) 		428.5
(1.6) 		321.5
(-3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 322
1 2 3 4 5 6 range
A 579.9
(3)
P 		485.1
(1)
P 		526.6
(1.9)
P 		469
(0.6)
P 		329.1
(-2.4)
P 		301.7
(-3)
P 		278
B 539.9
(1.5)
P 		503.6
(0.7)
P 		604
(3)
P 		469
(-0.2)
P 		347.1
(-3)
P 		405.4
(-1.6)
P 		257
C 497.4
(2)
P 		541.4
(3)
P 		488.9
(1.8)
P 		538.4
(2.9)
P 		282.4
(-3)
P 		403.8
(-0.2)
P 		259
avr 539.1
(3) 		510
(2.2) 		539.8
(3) 		492.1
(1.7) 		319.5
(-3) 		370.3
(-1.6) 		220
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 179.7
(3)
P 		91.6
(-1)
P 		112.9
(-0)
P 		46.9
(-3)
P 		133
B 128.9
(3)
P 		103.3
(0.4)
P 		94.4
(-0.5)
P 		68.9
(-3)
P 		60
C 159.7
(3)
P 		119.1
(0.7)
P 		155.7
(2.8)
P 		54
(-3)
P 		106
avr 156.1
(3) 		104.7
(-0.1) 		121
(0.9) 		56.6
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 106.9
(-1)
P 		172.5
(3)
P 		114.7
(-0.5)
P 		119
(-0.2)
P 		99.3
(-1.4)
P 		73.4
(-3)
P 		99
B 187.8
(3)
P 		167.6
(1.1)
P 		146.7
(-0.9)
P 		124.2
(-3)
P 		141
(-1.4)
P 		151.2
(-0.5)
P 		64
C 184.4
(3)
P 		165.2
(1.8)
P 		124.4
(-0.9)
P 		108.3
(-1.9)
P 		91.4
(-3)
P 		135.2
(-0.2)
P 		93
avr 159.7
(2.1) 		168.4
(3) 		128.6
(-1.1) 		117.2
(-2.3) 		110.6
(-3) 		119.9
(-2) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180063_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16466
Sequence Type Exemplar sequence
Representative Public ID F08C6.3 NCBI
Target Description F08C6.3 /REP_DB=WormBase Gene ID /WP=CE02592 /TR=Q19201 /GB=AAA68727.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076881(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076881 NCBI Caenorhabditis elegans F08C6.3 (F08C6.3) mRNA, complete cds. 11/11 None
GENEFINDER00000044588 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7565274:7567938:1 11/11 None
F08C6.3.2 ENSEMBL cdna:known chromosome:CEL140:X:7565264:7568081:1 gene:F08C6.3 11/11 None
F08C6.3.1 ENSEMBL cdna:known chromosome:CEL140:X:7565266:7568081:1 gene:F08C6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044577 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7565272-7567937(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08C6.3
Entrez Gene 181018 Entrez gene
SwissProt Q19201 EMBL-EBI
WormBase CE30938 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259939_S_AT Vps52/Sac2 family protein at
CANINE:1585035_AT similar to suppressor of actin mutations 2-like isoform a cfa
CANINE_2:CFA.19837.1.S1_S_AT similar to suppressor of actin mutations 2-like isoform a cfa
CANINE_2:CFA.7293.1.A1_AT similar to suppressor of actin mutations 2-like isoform a cfa
CANINE_2:CFAAFFX.2334.1.S1_S_AT similar to suppressor of actin mutations 2-like isoform a cfa
DROSOPHILA_2:1629923_AT dm
DROSGENOME1:145825_AT dm
HG-U133_PLUS_2:214585_S_AT vacuolar protein sorting 52 (yeast) hs
HG-U133A_2:214585_S_AT vacuolar protein sorting 52 (yeast) hs
HG-FOCUS:214585_S_AT vacuolar protein sorting 52 (yeast) hs
HG-U133A:214585_S_AT vacuolar protein sorting 52 (yeast) hs
HU35KSUBA:RC_AA082848_AT vacuolar protein sorting 52 (yeast) hs
U133_X3P:HS.169407.1.A2_3P_A_AT vacuolar protein sorting 52 (yeast) hs
HG-U95AV2:32658_AT vacuolar protein sorting 52 (yeast) hs
MG-U74AV2:103828_AT vacuolar protein sorting 52 (yeast) mm
MOE430A:1437078_AT vacuolar protein sorting 52 (yeast) mm
MOUSE430A_2:1437078_AT vacuolar protein sorting 52 (yeast) mm
MOUSE430_2:1437078_AT vacuolar protein sorting 52 (yeast) mm
MOE430B:1447894_X_AT vacuolar protein sorting 52 (yeast) mm
MOUSE430_2:1447894_X_AT vacuolar protein sorting 52 (yeast) mm
MU19KSUBA:TC14386_AT PREDICTED: Mus musculus vacuolar protein sorting 52 (yeast) (Vps52), mRNA mm
MU19KSUBA:TC18481_AT PREDICTED: Mus musculus vacuolar protein sorting 52 (yeast) (Vps52), mRNA mm
MU19KSUBA:TC23620_AT PREDICTED: Mus musculus vacuolar protein sorting 52 (yeast) (Vps52), mRNA mm
MU19KSUBC:TC39266_AT PREDICTED: Mus musculus vacuolar protein sorting 52 (yeast) (Vps52), mRNA mm
RAE230A:1394386_S_AT vacuolar protein sorting 52 (yeast) rn
RAT230_2:1394386_S_AT vacuolar protein sorting 52 (yeast) rn
RG-U34A:RC_AI071435_AT vacuolar protein sorting 52 (yeast) rn
RAE230A:1369668_X_AT vacuolar protein sorting 52 (yeast) rn
RAT230_2:1369668_X_AT vacuolar protein sorting 52 (yeast) rn
RAE230A:1369667_AT vacuolar protein sorting 52 (yeast) rn
RAT230_2:1369667_AT vacuolar protein sorting 52 (yeast) rn
Protein Similarities
Method ID Description E-Value
blast AAA68727 Hypothetical protein F08C6.3 [Caenorhabditis elegans] ref|NP_509282.2| F08C6.3 [Caenorhabditis elegans] 0.0
blast CAE70241 Hypothetical protein CBG16730 [Caenorhabditis briggsae] 0.0
blast NP_766208 vacuolar protein sorting 52 [Mus musculus] dbj|BAC34741.1| unnamed protein product [Mus musculus] 1.0E-124
blast NP_766208 vacuolar protein sorting 52 [Mus musculus] dbj|BAC34741.1| unnamed protein product [Mus musculus] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR007258 EMBL-EBI Vps52/Sac2 1.0E-126
Pfam IPR007258 EMBL-EBI Vps52/Sac2 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:180063_AT
gcaagaccgcatttcatagtccgacggtacgccgaactgacaagtgcacatttgatgata
gcaaaagcaagtggaaaggaaatgggtgcaaagatggaagctgtcttggagaacagtgaa
gactctattgaacaactattgactcgaatgtcagctatgcagcaaactcagaaaaataag
cacgtctttctgattaacaattacgatcttattctttcgattatcgataacgaggaaagc
aagcatacaaagatttatgcaattgtccatgagcttgaacaaaaaagtattgatgatttt
gttgaagagatgctagagccacatattgggtacatgattaaatttgtcaacgagtacaaa
gttggaacggtggtagcaaacttcaatgcaaagtggagacctgcagtggacagtattaat
tcagaatgcatacaacttttcactaacttcagcctgggaaccaccattttacagacaatc
ttcacaaagtacgttcagtatatcaatagattcacaaagattctgtcccatgacgtattt
gctaaaaatcccgtgtgttcccagttagtcaacgttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGACCGCATTTCATAGTCCGAC 504 321 1345 Antisense
TAGTCCGACGGTACGCCGAACTGAC 182 639 1361 Antisense
GACTCGAATGTCAGCTATGCAGCAA 524 373 1485 Antisense
AAGCACGTCTTTCTGATTAACAATT 473 151 1522 Antisense
AGTGGAGACCTGCAGTGGACAGTAT 123 59 1736 Antisense
ACAACTTTTCACTAACTTCAGCCTG 124 113 1776 Antisense
TAACTTCAGCCTGGGAACCACCATT 290 639 1788 Antisense
GAACCACCATTTTACAGACAATCTT 528 345 1802 Antisense
GATTCTGTCCCATGACGTATTTGCT 479 431 1863 Antisense
TTGCTAAAAATCCCGTGTGTTCCCA 692 699 1883 Antisense
GTGTTCCCAGTTAGTCAACGTTCAT 592 485 1899 Antisense
Sequence Source Affymetrix Proprietary Database