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[180062_s_at]

Description T22C1.11 /REP_DB=WormBase Gene ID /WP=CE24001 /TR=Q22671 /GB=CAA99927.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 53      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 62      6grp_total > 50      4grp_total > 29      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 230
1 2 3 4 range
A 409.1
(3)
P 		316.9
(-0.4)
P 		245.6
(-3)
P 		357.1
(1.1)
P 		164
B 406.7
(1.3)
P 		379.5
(0.3)
P 		294.7
(-3)
P 		450.9
(3)
P 		156
C 475.6
(3)
P 		395.9
(-1.4)
P 		367.8
(-3)
P 		475.3
(3)
P 		108
avr 430.5
(3) 		364.1
(-0.1) 		302.7
(-3) 		427.8
(2.9) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 398
1 2 3 4 5 6 range
A 416
(-1.3)
P 		533
(1.9)
P 		573.7
(3)
P 		485
(0.6)
P 		351.8
(-3)
P 		374.9
(-2.4)
P 		222
B 310.9
(-3)
P 		427.4
(-0.6)
P 		598.1
(3)
P 		452.1
(-0.1)
P 		325.6
(-2.7)
P 		504.5
(1)
P 		287
C 335.2
(-2)
P 		498.1
(0.5)
P 		486.7
(0.3)
P 		664.7
(3)
P 		266.8
(-3)
P 		490.9
(0.4)
P 		398
avr 354
(-2) 		486.2
(1.3) 		552.8
(3) 		533.9
(2.5) 		314.7
(-3) 		456.8
(0.6) 		238
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 148.9
(3)
P 		68.8
(-2)
P 		64.2
(-2.3)
P 		52.3
(-3)
P 		97
B 129.7
(3)
P 		93.7
(-0.5)
P 		68.3
(-3)
P 		96.1
(-0.3)
P 		61
C 157.4
(3)
P 		113.8
(-0.4)
P 		128.2
(0.7)
P 		80.1
(-3)
P 		77
avr 145.3
(3) 		92.1
(-1.6) 		86.9
(-2.1) 		76.2
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 76.7
(-3)
P 		189.5
(3)
P 		124.9
(-0.4)
P 		123
(-0.5)
P 		106.2
(-1.4)
P 		91.3
(-2.2)
P 		113
B 108.2
(-3)
P 		142.3
(-0.4)
P 		145.2
(-0.2)
P 		119.8
(-2.1)
P 		132.3
(-1.2)
P 		188.1
(3)
P 		80
C 124.2
(-0.1)
P 		152
(2.1)
P 		123.9
(-0.1)
P 		133.7
(0.6)
P 		86.3
(-3)
P 		164.3
(3)
P 		78
avr 103
(-3) 		161.3
(3) 		131.3
(-0.1) 		125.5
(-0.7) 		108.3
(-2.5) 		147.9
(1.6) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180062_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1472
Sequence Type Exemplar sequence
Representative Public ID T22C1.11 NCBI
Target Description T22C1.11 /REP_DB=WormBase Gene ID /WP=CE24001 /TR=Q22671 /GB=CAA99927.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059796(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059796 NCBI Caenorhabditis elegans T22C1.11 (T22C1.11) mRNA, complete cds. 11/11 None
SNAP00000000056 ENSEMBL cdna:SNAP chromosome:CEL140:I:7971012:7976807:-1 11/11 None
GENEFINDER00000000059 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7975162:7976807:-1 11/11 None
T22C1.11 ENSEMBL cdna:known chromosome:CEL140:I:7975107:7976813:-1 gene:T22C1.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7975092-7976738(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22C1.11
Entrez Gene 172573 Entrez gene
SwissProt Q22671 EMBL-EBI
WormBase CE24001 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99927 Hypothetical protein T22C1.11 [Caenorhabditis elegans] ref|NP_492197.1| T22C1.11 [Caenorhabditis elegans] 0.0
blast CAE63718 Hypothetical protein CBG08239 [Caenorhabditis briggsae] 2.0E-77
Sequence
Target Sequence 
>C. ELEGANS:180062_S_AT
gtacttggcgtaatgacaccatcaaatgatactggttctcctatgtttgaaatcaaacag
aaatcaccagaagaatccatatcatcagaagaatccacatcttcaacatcttctactccc
tatcaaccagaaacatctccatttcctgagaagaagcagtggcagagatgtaactcatca
gaggagcgtcgcgagcgtgagagaatgagaaaacgaatgtatcgagcaaagcaaaagttc
atttcaactggtaaattggaaatgcaatggaatccagcaccgataaaaagaagtccaaac
gatgaaccagaagaaggtattacaccacttcctgagtggcaatcggggttatcgtctgat
caaaagctggtggcacatcgaatctacaataaaagatatcgggaacgcatgaaaagttct
gcagtaaaagatgaagcttctagaagtcagagtcgagaagaacaacctttagaaccatca
gagacactcaattttgatttatcaacgcttccaccagatctccttctgaagcaaatgctc
tcaaccatatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACTTGGCGTAATGACACCATCAA 135 461 754 Antisense
ATGATACTGGTTCTCCTATGTTTGA 495 43 779 Antisense
CTACTCCCTATCAACCAGAAACATC 148 227 866 Antisense
GAAACATCTCCATTTCCTGAGAAGA 134 357 883 Antisense
AACTCATCAGAGGAGCGTCGCGAGC 349 141 925 Antisense
AAGGTATTACACCACTTCCTGAGTG 152 157 1067 Antisense
ACTTCCTGAGTGGCAATCGGGGTTA 394 101 1080 Antisense
GGCAATCGGGGTTATCGTCTGATCA 568 533 1091 Antisense
GCTGGTGGCACATCGAATCTACAAT 246 295 1119 Antisense
TCCACCAGATCTCCTTCTGAAGCAA 404 589 1263 Antisense
GAAGCAAATGCTCTCAACCATATCA 220 339 1281 Antisense
Sequence Source Affymetrix Proprietary Database