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[180061_at]

Description F56F4.7 /REP_DB=WormBase Gene ID /WP=CE11272 /TR=O01844 /GB=AAB54204.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 7.4
(-3)
A 		58.5
(-0.6)
A 		60.8
(-0.5)
A 		137.2
(3)
M 		130
B 37
(-3)
A 		63
(-0.7)
A 		45.6
(-2.2)
A 		104.8
(3)
A 		68
C 7.5
(-2.9)
A 		7
(-2.9)
A 		5.3
(-3)
A 		123.5
(3)
P 		118
avr 17.3
(-3) 		42.8
(-1.5) 		37.2
(-1.9) 		121.8
(3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 52.3
(-1.7)
A 		35.9
(-2.7)
A 		66.5
(-0.9)
A 		30.5
(-3)
A 		82.2
(0)
A 		133.3
(3)
A 		103
B 6.4
(-3)
A 		49.6
(-0.8)
A 		55.5
(-0.5)
A 		46
(-0.9)
A 		122
(3)
P 		112.9
(2.5)
P 		116
C 28.4
(-2.1)
A 		41.4
(-1.5)
A 		10.1
(-3)
A 		46.4
(-1.2)
A 		84.2
(0.6)
A 		132.1
(3)
P 		122
avr 29
(-3) 		42.3
(-2.2) 		44
(-2.1) 		41
(-2.3) 		96.1
(1.1) 		126.1
(3) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 2.7
(-3)
A 		12.7
(0.4)
A 		15.9
(1.6)
A 		20.1
(3)
M 		17
B 11.8
(-2.4)
A 		15.6
(-0.4)
A 		10.6
(-3)
A 		22.3
(3)
A 		12
C 2.5
(-2.8)
A 		2
(-3)
A 		1.9
(-3)
A 		20.8
(3)
P 		19
avr 5.7
(-3) 		10.1
(-1.3) 		9.5
(-1.5) 		21.1
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 9.6
(-2.5)
A 		12.8
(-1.8)
A 		14.5
(-1.3)
A 		7.7
(-3)
A 		24.8
(1.2)
A 		32.4
(3)
A 		25
B 2.2
(-3)
A 		16.5
(-1.2)
A 		13.5
(-1.6)
A 		12.2
(-1.7)
A 		49.6
(3)
P 		42.1
(2.1)
P 		47
C 10.5
(-1.9)
A 		12.6
(-1.6)
A 		2.6
(-3)
A 		9.3
(-2)
A 		27.3
(0.6)
A 		44.2
(3)
P 		42
avr 7.4
(-3) 		14
(-1.8) 		10.2
(-2.5) 		9.7
(-2.6) 		33.9
(1.9) 		39.6
(3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180061_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1459
Sequence Type Exemplar sequence
Representative Public ID F56F4.7 NCBI
Target Description F56F4.7 /REP_DB=WormBase Gene ID /WP=CE11272 /TR=O01844 /GB=AAB54204.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059370(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059370 NCBI Caenorhabditis elegans F56F4.7 (F56F4.7) mRNA, complete cds. 11/11 None
SNAP00000027762 ENSEMBL cdna:SNAP chromosome:CEL140:I:6152939:6153269:-1 9/11 None
F56F4.7 ENSEMBL cdna:known chromosome:CEL140:I:6152464:6153269:-1 gene:F56F4.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027770 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6152463-6153269(-) 78.99 100.0
Public Domain and Genome References
Gene Title
Ensembl F56F4.7
Entrez Gene 186401 Entrez gene
SwissProt O01844 EMBL-EBI
WormBase CE11272 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54204 Hypothetical protein F56F4.7 [Caenorhabditis elegans] ref|NP_491771.1| F56F4.7 [Caenorhabditis elegans] 1.0E-31
blast AAB54204 Hypothetical protein F56F4.7 [Caenorhabditis elegans] ref|NP_491771.1| F56F4.7 [Caenorhabditis elegans] 2.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491771.1 1 4-23
F56F4.7 1 4-23
SNAP00000027762 1 4-23
Sequence
Target Sequence 
>C. ELEGANS:180061_AT
gttcgggctcatttttgcaattatcatgatgattcttcatatctgtatcaccaaatatct
tgtcaatcaaagactcaagcacatgccacgtgctcggaaagtcaaggtcaagaaagacaa
aaagggaaagaatggaaagaaaggaaagaaggggaaaaagggaaagaaaggatccggctc
aactggctctggatcaacttctggaacaactgctggtggaaccactgccggttctacaat
catatgttccaataaagtaaaaattttccccgtaaccattcagtgtaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCGGGCTCATTTTTGCAATTATC 418 443 15 Antisense
GATGATTCTTCATATCTGTATCACC 254 411 42 Antisense
ATCTGTATCACCAAATATCTTGTCA 44 35 55 Antisense
AATCAAAGACTCAAGCACATGCCAC 117 171 79 Antisense
CTCAAGCACATGCCACGTGCTCGGA 656 227 88 Antisense
CACGTGCTCGGAAAGTCAAGGTCAA 65 199 101 Antisense
GATCCGGCTCAACTGGCTCTGGATC 279 417 185 Antisense
TTCTGGAACAACTGCTGGTGGAACC 539 689 213 Antisense
TGGTGGAACCACTGCCGGTTCTACA 235 553 228 Antisense
GCCGGTTCTACAATCATATGTTCCA 17 285 241 Antisense
TTCCCCGTAACCATTCAGTGTAACA 510 553 280 Antisense
Sequence Source Affymetrix Proprietary Database