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[180060_at]

Description ZC132.9 /REP_DB=WormBase Gene ID /WP=CE26611 /TR=O17523 /GB=AAB63931.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 03      4grp_highest_8_8 > 59      4grp_high_8_8 > 26      6grp_highest_nonorm > 90      6grp_total > 24      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 251.4
(3)
P 		180.5
(0.4)
P 		88.4
(-3)
P 		156.4
(-0.5)
P 		163
B 281.9
(3)
P 		136.7
(-1.8)
P 		99.3
(-3)
P 		115.5
(-2.5)
P 		183
C 278.4
(3)
P 		153.8
(-1.2)
P 		102.3
(-3)
P 		153.9
(-1.2)
P 		176
avr 270.6
(3) 		157
(-0.9) 		96.7
(-3) 		141.9
(-1.4) 		174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 232.9
(3)
P 		180.4
(0.1)
P 		210.6
(1.8)
P 		173.1
(-0.3)
P 		130.1
(-2.7)
P 		124.8
(-3)
P 		108
B 232.9
(3)
P 		225.9
(2.6)
P 		178.3
(0.2)
P 		156
(-1)
P 		126.3
(-2.5)
P 		117.5
(-3)
P 		115
C 208.7
(1.8)
P 		232.2
(3)
P 		118
(-2.7)
P 		126.9
(-2.2)
P 		111.1
(-3)
P 		139.2
(-1.6)
P 		121
avr 224.8
(3) 		212.8
(2.3) 		169
(-0.3) 		152
(-1.3) 		122.5
(-3) 		127.2
(-2.7) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 91.5
(3)
P 		39.2
(-1.6)
P 		23.1
(-3)
P 		22.9
(-3)
P 		69
B 89.9
(3)
P 		33.8
(-2)
P 		23
(-3)
P 		24.6
(-2.9)
P 		67
C 92.1
(3)
P 		44.2
(-1.3)
P 		35.7
(-2.1)
P 		25.9
(-3)
P 		66
avr 91.2
(3) 		39.1
(-1.7) 		27.3
(-2.7) 		24.5
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 42.9
(-0.8)
P 		64.1
(3)
P 		45.9
(-0.2)
P 		43.9
(-0.6)
P 		39.2
(-1.4)
P 		30.4
(-3)
P 		34
B 81
(3)
P 		75.2
(2.1)
P 		43.3
(-2.7)
P 		41.3
(-3)
P 		51.3
(-1.5)
P 		43.8
(-2.6)
P 		40
C 77.3
(3)
P 		70.9
(2.3)
P 		30
(-2.5)
P 		25.5
(-3)
P 		35.9
(-1.8)
P 		46.6
(-0.6)
P 		52
avr 67.1
(2.5) 		70.1
(3) 		39.7
(-2.5) 		36.9
(-3) 		42.1
(-2.1) 		40.3
(-2.4) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180060_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19487
Sequence Type Exemplar sequence
Representative Public ID ZC132.9 NCBI
Target Description ZC132.9 /REP_DB=WormBase Gene ID /WP=CE26611 /TR=O17523 /GB=AAB63931.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071792(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071792 NCBI Caenorhabditis elegans ZC132.9 (ZC132.9) mRNA, complete cds. 11/11 None
SNAP00000042304 ENSEMBL cdna:SNAP chromosome:CEL140:V:4317734:4319629:-1 11/11 None
GENEFINDER00000042307 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4317734:4319650:-1 11/11 None
ZC132.9 ENSEMBL cdna:known chromosome:CEL140:V:4317734:4319154:-1 gene:ZC132.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4317733-4318604(-) 87.99 97.98
Public Domain and Genome References
Gene Title
Ensembl ZC132.9
Entrez Gene 191085 Entrez gene
SwissProt O17523 EMBL-EBI
WormBase CE26611 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB63931 Hypothetical protein ZC132.9 [Caenorhabditis elegans] ref|NP_504193.1| ZC132.9 [Caenorhabditis elegans] 1.0E-137
blast AAB63931 Hypothetical protein ZC132.9 [Caenorhabditis elegans] ref|NP_504193.1| ZC132.9 [Caenorhabditis elegans] 1.0E-109
blast CAE62236 Hypothetical protein CBG06289 [Caenorhabditis briggsae] 1.0E-47
blast NP_001024297 ZC132.3b [Caenorhabditis elegans] 3.0E-43
blast CAB04985 Hypothetical protein ZK218.4 [Caenorhabditis elegans] ref|NP_507332.1| ZK218.4 [Caenorhabditis elegans] 1.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504193.1 3 101-123,133-155,187-209
ZC132.9 3 101-123,133-155,187-209
SNAP00000042304 6 33-55,76-98,113-135,156-178,191-213,245-267
GENEFINDER00000042307 5 39-61,81-103,166-188,198-220,252-274
Sequence
Target Sequence 
>C. ELEGANS:180060_AT
atggcactagctttcgcatttgcaaatcaatggttttcgtcaacctatgagactctgatt
ggcttgttttcgatctacaaattcatgaactcccgccagccagcagaactccgtggatac
ttcactcggagaagcgttgcagttctactgtatgtgattcttctgtctgtcatcgccaag
gattttgggttcatcatgtgggctgttatactttttatttccgagccatttccgcttgaa
atcctaggacaattaaatttctattactacattagctacatctcatttcaaatgcttctt
ttcattggaatgatgtctcaattttcaatgaaaacagacgccggaaatagtcattcggat
aatcaaatcgctcgtcaaacgaaaatcatcggaacaatcaagattatcctatttgcttta
ttcctcttgggtacggttacaggattcatgccagtaattgttggaacaatcttcgtgagc
atcgattgttttttggtgccgattgtcataatgctaacggagattatgtacagcccaaac
ccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCACTAGCTTTCGCATTTGCAA 79 53 169 Antisense
CTACAAATTCATGAACTCCCGCCAG 440 225 243 Antisense
GCAGAACTCCGTGGATACTTCACTC 560 313 271 Antisense
ACTGTATGTGATTCTTCTGTCTGTC 535 97 315 Antisense
TTCTGTCTGTCATCGCCAAGGATTT 600 691 329 Antisense
GGGTTCATCATGTGGGCTGTTATAC 305 497 355 Antisense
GAGCCATTTCCGCTTGAAATCCTAG 557 383 391 Antisense
ACTACATTAGCTACATCTCATTTCA 381 101 434 Antisense
GATTATCCTATTTGCTTTATTCCTC 17 431 570 Antisense
TTATTCCTCTTGGGTACGGTTACAG 420 677 586 Antisense
GGAGATTATGTACAGCCCAAACCCG 642 513 687 Antisense
Sequence Source Affymetrix Proprietary Database