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[180059_at]

Description B0205.2 /REP_DB=WormBase Gene ID /WP=CE17316 /TR=O61744 /GB=AAC16989.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 19      6grp_cgc > 61      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 28.5
(-1.2)
A 		29.9
(-1)
A 		8.3
(-3)
A 		74.7
(3)
P 		66
B 2.9
(-3)
A 		27.3
(0.1)
A 		10.1
(-2.1)
A 		50.4
(3)
P 		48
C 30.2
(-1.5)
P 		29.4
(-1.6)
A 		18.3
(-3)
A 		65.1
(3)
P 		47
avr 20.5
(-2) 		28.9
(-1) 		12.2
(-3) 		63.4
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 27.4
(0.3)
A 		40
(2.1)
P 		46.4
(3)
P 		35
(1.4)
A 		32.6
(1.1)
A 		3.5
(-3)
A 		43
B 28.6
(0.1)
P 		44.3
(3)
P 		38.6
(2)
P 		28.9
(0.2)
P 		30
(0.4)
A 		11.5
(-3)
A 		33
C 39.2
(1.1)
P 		45.7
(1.8)
P 		55.8
(3)
P 		23.6
(-0.7)
A 		32.4
(0.3)
P 		3.8
(-3)
A 		52
avr 31.7
(0.8) 		43.3
(2.5) 		46.9
(3) 		29.2
(0.4) 		31.7
(0.8) 		6.3
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.4
(2.7)
A 		6.5
(-0)
A 		2.2
(-3)
A 		10.9
(3)
P 		9
B 0.9
(-3)
A 		6.7
(0.6)
A 		2.3
(-2.1)
A 		10.7
(3)
P 		10
C 10
(1.7)
P 		8.5
(-0.3)
A 		6.4
(-3)
A 		11
(3)
P 		5
avr 7.1
(-0.1) 		7.2
(-0) 		3.6
(-3) 		10.9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5
(-1.2)
A 		14.2
(3)
P 		10.1
(1.2)
P 		8.9
(0.6)
A 		9.8
(1)
A 		0.9
(-3)
A 		13
B 9.9
(0.2)
P 		14.7
(3)
P 		9.4
(-0.1)
P 		7.7
(-1)
P 		12.2
(1.6)
A 		4.3
(-3)
A 		10
C 14.5
(3)
P 		13.9
(2.7)
P 		14.2
(2.9)
P 		4.8
(-1.4)
A 		10.5
(1.2)
P 		1.3
(-3)
A 		13
avr 9.8
(0.8) 		14.3
(3) 		11.2
(1.5) 		7.1
(-0.6) 		10.8
(1.3) 		2.2
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180059_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1416
Sequence Type Exemplar sequence
Representative Public ID B0205.2 NCBI
Target Description B0205.2 /REP_DB=WormBase Gene ID /WP=CE17316 /TR=O61744 /GB=AAC16989.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025790(11), NM_001025789(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025790 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-85) (srz-85) mRNA, complete cds. 11/11 None
NM_001025789 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-85) (srz-85) mRNA, complete cds. 11/11 None
B0205.2a ENSEMBL cdna:known chromosome:CEL140:I:10732282:10733684:-1 gene:B0205.2 11/11 None
B0205.2b ENSEMBL cdna:known chromosome:CEL140:I:10732282:10734257:-1 gene:B0205.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10732212-10733615(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0205.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAW88420 Serpentine receptor, class z protein 85, isoform b [Caenorhabditis elegans] ref|NP_001020961.1| Serpentine Receptor, class Z family member (srz-85) [Caenorhabditis elegans] 0.0
blast AAC16989 Serpentine receptor, class z protein 85, isoform a [Caenorhabditis elegans] ref|NP_001020960.1| Serpentine Receptor, class Z family member (srz-85) [Caenorhabditis elegans] 1.0E-169
blast AAC16989 Serpentine receptor, class z protein 85, isoform a [Caenorhabditis elegans] ref|NP_001020960.1| Serpentine Receptor, class Z family member (srz-85) [Caenorhabditis elegans] 1.0E-153
blast AAW88420 Serpentine receptor, class z protein 85, isoform b [Caenorhabditis elegans] ref|NP_001020961.1| Serpentine Receptor, class Z family member (srz-85) [Caenorhabditis elegans] 1.0E-153
blast CAB03906 Hypothetical protein C18D4.9 [Caenorhabditis elegans] ref|NP_507439.1| Serpentine Receptor, class Z family member (srz-90) [Caenorhabditis elegans] 2.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 9.2E-10
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.2E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001020961.1 8 20-41,54-76,91-113,120-142,152-174,195-217,232-254,261-283
NP_001020960.1 7 33-55,70-92,99-121,131-153,174-196,211-233,240-262
B0205.2a 7 33-55,70-92,99-121,131-153,174-196,211-233,240-262
B0205.2b 8 20-41,54-76,91-113,120-142,152-174,195-217,232-254,261-283
Sequence
Target Sequence 
>C. ELEGANS:180059_AT
attgttgccagtattttttcccattccatattttcacccggtttttatcaagaagaaatt
taccagactttatctggtatttgtatgcatttttctttgtaaatgaactgattggaatat
ttctttactgggctcattggtttattctgtcgtttgaagtaattgatgttattattatct
tttatcaaacggcatacatgattttgaacattattctcatattcttatgtccagtttgct
actttccgattattttaagtctttggaaaagtagtaatctacgttctgaagagcatattt
atcttcataactacatgttttggcagagtgtactcgtcttgttcttcaaatttatggtta
ttatgctaataatatttatatccactgcagaaaacttaataatatatttaatagctggta
caattgcatttgatggcttaacaacacctataataattcaaatatcctatttgggctgca
acagaaataatttgaaaatattattaacatcgttcaatttcaaaaagttctttgcagtta
tttttgggtgcacgggacgtaatgtggtgcaccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGTTGCCAGTATTTTTTCCCATT 350 5 335 Antisense
TATTTTTTCCCATTCCATATTTTCA 307 663 346 Antisense
TGGAATATTTCTTTACTGGGCTCAT 151 547 447 Antisense
TGGGCTCATTGGTTTATTCTGTCGT 70 555 463 Antisense
CATATTCTTATGTCCAGTTTGCTAC 680 213 552 Antisense
CAGTTTGCTACTTTCCGATTATTTT 597 197 566 Antisense
GCAGAGTGTACTCGTCTTGTTCTTC 247 313 657 Antisense
GCATTTGATGGCTTAACAACACCTA 134 309 760 Antisense
AATATCCTATTTGGGCTGCAACAGA 568 173 795 Antisense
CAGTTATTTTTGGGTGCACGGGACG 166 205 869 Antisense
CACGGGACGTAATGTGGTGCACCCA 541 197 885 Antisense
Sequence Source Affymetrix Proprietary Database