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[180058_s_at]

Description C16H3.3 /REP_DB=WormBase Gene ID /WP=CE27697 /TR=Q94170 /GB=AAB07583.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 50      6grp_total > 04      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 356
1 2 3 4 range
A 644.2
(3)
P 		468.8
(-1)
P 		380.7
(-3)
P 		419.9
(-2.1)
P 		264
B 735.5
(3)
P 		482.2
(-1.3)
P 		384.6
(-2.9)
P 		379.3
(-3)
P 		356
C 633.7
(3)
P 		479.6
(-0.9)
P 		399
(-3)
P 		399.4
(-3)
P 		235
avr 671.1
(3) 		476.9
(-1.1) 		388.1
(-3) 		399.5
(-2.8) 		283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 344
1 2 3 4 5 6 range
A 701.8
(3)
P 		650.9
(2.1)
P 		375.3
(-3)
P 		494.3
(-0.8)
P 		408
(-2.4)
P 		447.2
(-1.7)
P 		327
B 652.2
(3)
P 		528.4
(0.5)
P 		429.7
(-1.5)
P 		475.4
(-0.6)
P 		387.9
(-2.4)
P 		357.9
(-3)
P 		294
C 661.6
(3)
P 		612.2
(1.9)
P 		587.8
(1.4)
P 		538
(0.3)
P 		400.4
(-2.7)
P 		384.5
(-3)
P 		277
avr 671.9
(3) 		597.2
(1.4) 		464.3
(-1.5) 		502.6
(-0.7) 		398.8
(-2.9) 		396.5
(-3) 		275
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 234.6
(3)
P 		101.8
(-1.6)
P 		99.5
(-1.7)
P 		61.5
(-3)
P 		173
B 234.5
(3)
P 		119.1
(-1.5)
P 		89.1
(-2.7)
P 		80.8
(-3)
P 		154
C 209.8
(3)
P 		137.9
(-0)
P 		139.1
(0)
P 		67.3
(-3)
P 		143
avr 226.3
(3) 		119.6
(-1.1) 		109.2
(-1.5) 		69.9
(-3) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 129.4
(-1.1)
P 		231.5
(3)
P 		81.7
(-3)
P 		125.4
(-1.2)
P 		123.1
(-1.3)
P 		108.9
(-1.9)
P 		150
B 226.9
(3)
P 		175.9
(0.5)
P 		104.3
(-3)
P 		125.9
(-1.9)
P 		157.6
(-0.4)
P 		133.5
(-1.6)
P 		123
C 245.2
(3)
P 		186.8
(0.4)
P 		149.6
(-1.2)
P 		108.2
(-3)
P 		129.6
(-2.1)
P 		128.7
(-2.1)
P 		137
avr 200.5
(3) 		198.1
(2.8) 		111.9
(-3) 		119.8
(-2.5) 		136.8
(-1.3) 		123.7
(-2.2) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180058_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17613
Sequence Type Exemplar sequence
Representative Public ID C16H3.3 NCBI
Target Description C16H3.3 /REP_DB=WormBase Gene ID /WP=CE27697 /TR=Q94170 /GB=AAB07583.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029238(11), NM_001029239(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029238 NCBI Caenorhabditis elegans C16H3.3a (C16H3.3) mRNA, complete cds. 11/11 None
NM_001029239 NCBI Caenorhabditis elegans C16H3.3b (C16H3.3) mRNA, complete cds. 11/11 None
GENEFINDER00000016204 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17601886:17609957:-1 11/11 None
SNAP00000016200 ENSEMBL cdna:SNAP chromosome:CEL140:X:17602516:17604453:-1 11/11 None
C16H3.3a ENSEMBL cdna:known chromosome:CEL140:X:17601539:17609957:-1 gene:C16H3.3 11/11 A 
C16H3.3b ENSEMBL cdna:known chromosome:CEL140:X:17601886:17604521:-1 gene:C16H3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17601884-17604452(-) 100.0 100.0
Public Domain and Genome References
Ensembl C16H3.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB07583 Hypothetical protein C16H3.3a [Caenorhabditis elegans] ref|NP_001024409.1| C16H3.3a [Caenorhabditis elegans] 0.0
blast AAO91745 Hypothetical protein C16H3.3b [Caenorhabditis elegans] ref|NP_001024410.1| C16H3.3b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180058_S_AT
aaacccacgtggtacactagcagtcgagtttggttcgacaagtcttcccgtaatcgaggc
caagttacccaacaagattttttggatcaattccaggaaacaactgatcccacagttctg
aattttcaaaaggaaatgctagagaaaacgaaacaagttgaagatgaagctgccgaagaa
aaaataaaaaattttcaacttccactggtctacgatttgcacaaacaacctcctcttctc
cgagaaagaatgatccagttccgtgaaaaacttgcccgcatgtaccagtatgaagacttc
gaaagggttcatatgacagatcccgcatgtcgtgaaatctggaaaaaactcagaccgatc
ccgtttgaaaatggaaacgttatggatgaagctgaagaagaactaacggcgcttatatca
ttgtacaaaaaacagtttgctcgggagaacccagtaattccacttccgcgggcaaaagac
gagcgtcggcctactgattcggaaattatgaaagcagccgacagatgtttgaaagatgtg
gtggatacagttgtgattcgtgacctggccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCCACGTGGTACACTAGCAGTC 356 125 1360 Antisense
TGGTTCGACAAGTCTTCCCGTAATC 515 549 1390 Antisense
TAATCGAGGCCAAGTTACCCAACAA 332 635 1410 Antisense
TTCCACTGGTCTACGATTTGCACAA 547 699 1559 Antisense
CAACCTCCTCTTCTCCGAGAAAGAA 439 185 1585 Antisense
AAAACTTGCCCGCATGTACCAGTAT 60 131 1626 Antisense
GACAGATCCCGCATGTCGTGAAATC 95 369 1674 Antisense
ACTCAGACCGATCCCGTTTGAAAAT 113 101 1707 Antisense
TCCACTTCCGCGGGCAAAAGACGAG 529 587 1818 Antisense
AAAAGACGAGCGTCGGCCTACTGAT 158 133 1833 Antisense
ACAGTTGTGATTCGTGACCTGGCCG 341 107 1906 Antisense
Sequence Source Affymetrix Proprietary Database