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[180057_at]

Description F20B4.3 /REP_DB=WormBase Gene ID /WP=CE07102 /TR=Q19622 /GB=AAC48144.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5.2
(-3)
A 		8.4
(-0.9)
A 		7.1
(-1.8)
A 		14.5
(3)
A 		9
B 10.7
(1.8)
A 		5
(-2.1)
A 		3.7
(-3)
A 		12.5
(3)
A 		9
C 7.2
(3)
A 		4.1
(-1.4)
A 		3
(-3)
A 		5.6
(0.7)
A 		4
avr 7.7
(-0) 		5.8
(-1.9) 		4.6
(-3) 		10.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 6.1
(0.3)
A 		3.5
(-3)
A 		8.2
(3)
A 		3.8
(-2.6)
A 		5.1
(-1)
A 		6.2
(0.4)
A 		5
B 6.7
(3)
A 		4
(-1.6)
A 		5.3
(0.6)
A 		3.6
(-2.3)
A 		3.2
(-3)
A 		4.3
(-1.1)
A 		4
C 7.8
(-2)
A 		5.9
(-2.4)
A 		10.3
(-1.4)
A 		28.8
(3)
A 		3.4
(-3)
A 		3.5
(-3)
A 		25
avr 6.9
(-0.8) 		4.5
(-2.6) 		7.9
(-0.1) 		12.1
(3) 		3.9
(-3) 		4.7
(-2.4) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.9
(-1)
A 		1.8
(-3)
A 		1.8
(-3)
A 		2.1
(3)
A 		0
B 3.4
(3)
A 		1.2
(-2.3)
A 		0.9
(-3)
A 		2.7
(1.3)
A 		3
C 2.4
(3)
A 		1.2
(-1.8)
A 		1
(-2.6)
A 		0.9
(-3)
A 		2
avr 2.6
(3) 		1.4
(-2.1) 		1.2
(-3) 		1.9
(-0) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.1
(-2.3)
A 		1.3
(-0.8)
A 		1.8
(3)
A 		1
(-3)
A 		1.5
(0.8)
A 		1.5
(0.8)
A 		1
B 2.3
(3)
A 		1.3
(-1.6)
A 		1.3
(-1.6)
A 		1
(-3)
A 		1.3
(-1.6)
A 		1.6
(-0.2)
A 		1
C 2.9
(-0.7)
A 		1.8
(-2.1)
A 		2.6
(-1.1)
A 		5.8
(3)
A 		1.1
(-3)
A 		1.2
(-2.9)
A 		5
avr 2.1
(0.7) 		1.5
(-2.1) 		1.9
(-0.2) 		2.6
(3) 		1.3
(-3) 		1.4
(-2.5) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180057_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17532
Sequence Type Exemplar sequence
Representative Public ID F20B4.3 NCBI
Target Description F20B4.3 /REP_DB=WormBase Gene ID /WP=CE07102 /TR=Q19622 /GB=AAC48144.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078458(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078458 NCBI Caenorhabditis elegans F20B4.3 (F20B4.3) mRNA, complete cds. 11/11 None
SNAP00000007933 ENSEMBL cdna:SNAP chromosome:CEL140:X:17705310:17706749:-1 11/11 None
GENEFINDER00000007940 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17705310:17706635:-1 11/11 None
ZK1025.1 ENSEMBL cdna:pseudogene chromosome:CEL140:I:11451574:11454766:1 gene:ZK1025.1 10/11 None
F20B4.3 ENSEMBL cdna:known chromosome:CEL140:X:17705310:17706749:-1 gene:F20B4.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038814 8/11 Cross Hyb Matching Probes None
GENEFINDER00000038833 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl ZK1025.1
F20B4.3
Entrez Gene 184709 Entrez gene
SwissProt Q19622 EMBL-EBI
WormBase CE07102 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48144 Hypothetical protein F20B4.3 [Caenorhabditis elegans] ref|NP_510859.1| F20B4.3 [Caenorhabditis elegans] 0.0
blast CAA92477 Hypothetical protein T05A1.4 [Caenorhabditis elegans] ref|NP_501697.1| T05A1.4 [Caenorhabditis elegans] 1.0E-163
blast CAA92477 Hypothetical protein T05A1.4 [Caenorhabditis elegans] ref|NP_501697.1| T05A1.4 [Caenorhabditis elegans] 1.0E-146
blast NP_508646 T14G12.5 [Caenorhabditis elegans] gb|AAA82437.1| Hypothetical protein T14G12.5 [Caenorhabditis elegans] 1.0E-111
Sequence
Target Sequence 
>C. ELEGANS:180057_AT
aacttccgtgccttcaagaacagattcaatgcagtcgttcttgccaatcctcgacttcca
gcagtgacaaagttcaacatgttacgcagtcacctgctcggaaaagccttgccatgcatc
tcaaatcacgatgattccatggtagcttacaaaacaactatggacatgttagagtctgta
tttggtaaaggagatactcaaagaggtttactcgagcaattcagaacgctcaagttcaat
cattccaatccggaacaaatgaaactagatctcatctcccaccagctcttggtgcaaaga
ctgaccgcatcgggtctctcagcctccgacgagcggatcaccttgggtctcatcggaaaa
ctccctctctccctcagagataaagccacggagttttacactgatttggaaaccccttcc
gcaaatattctttatgagagaattcgcaagcacattaacagcttcgaaaatggcttgatc
gcggcgtccatgcacaccacaccctggtcatcagtctccgaacaagcttctgattcacca
atacacgaggatccggctagtcggttatttcgtgatctccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTCCGTGCCTTCAAGAACAGAT 401 139 832 Antisense
TCAATGCAGTCGTTCTTGCCAATCC 571 633 857 Antisense
GTTCAACATGTTACGCAGTCACCTG 535 445 903 Antisense
AGTCACCTGCTCGGAAAAGCCTTGC 67 63 919 Antisense
AAAGCCTTGCCATGCATCTCAAATC 237 125 934 Antisense
CAAAGACTGACCGCATCGGGTCTCT 298 193 1126 Antisense
CTCCGACGAGCGGATCACCTTGGGT 694 231 1155 Antisense
TGGGTCTCATCGGAAAACTCCCTCT 178 553 1175 Antisense
TGGAAACCCCTTCCGCAAATATTCT 279 529 1238 Antisense
GTCTCCGAACAAGCTTCTGATTCAC 248 471 1345 Antisense
TAGTCGGTTATTTCGTGATCTCCCT 153 653 1389 Antisense
Sequence Source Affymetrix Proprietary Database