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[180056_at]

Description F31A3.3 /REP_DB=WormBase Gene ID /WP=CE07160 /TR=Q19916 /GB=AAB36857.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 193.5
(1.7)
P 		17.4
(-3)
A 		27
(-2.7)
A 		241.1
(3)
A 		224
B 189.2
(3)
A 		27.3
(-3)
A 		47.4
(-2.3)
A 		152.1
(1.6)
A 		162
C 119
(1.1)
A 		27.2
(-2.7)
A 		20.8
(-3)
A 		164.5
(3)
A 		144
avr 167.2
(2.3) 		24
(-3) 		31.7
(-2.7) 		185.9
(3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 110.1
(-0.8)
A 		119.8
(-0.5)
P 		107.7
(-0.9)
P 		194.7
(1.3)
A 		261.9
(3)
A 		21.6
(-3)
A 		240
B 30.5
(-3)
A 		117.1
(-1.1)
A 		135.5
(-0.7)
A 		286.8
(2.7)
A 		298.6
(3)
P 		47.6
(-2.6)
A 		268
C 58.5
(-3)
A 		217
(1.1)
A 		149.6
(-0.6)
A 		290.6
(3)
A 		218.9
(1.1)
P 		59
(-3)
A 		232
avr 66.4
(-2.3) 		151.3
(0) 		130.9
(-0.6) 		257.4
(2.9) 		259.8
(3) 		42.7
(-3) 		217
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 70.5
(3)
P 		3.8
(-3)
A 		7.1
(-2.7)
A 		35.3
(-0.2)
A 		67
B 60.3
(3)
A 		6.7
(-3)
A 		11
(-2.5)
A 		32.4
(-0.1)
A 		54
C 39.4
(3)
A 		7.8
(-2.9)
A 		7.2
(-3)
A 		27.7
(0.8)
A 		32
avr 56.7
(3) 		6.1
(-3) 		8.4
(-2.7) 		31.8
(0) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 20.3
(-1.8)
A 		42.6
(0)
P 		23.5
(-1.5)
P 		49.4
(0.6)
A 		79
(3)
A 		5.3
(-3)
A 		74
B 10.6
(-3)
A 		39
(-1.5)
A 		32.9
(-1.8)
A 		76
(0.5)
A 		121.3
(3)
P 		17.7
(-2.6)
A 		111
C 21.7
(-2.8)
A 		66.2
(2.5)
A 		38.1
(-0.8)
A 		58.4
(1.5)
A 		70.8
(3)
P 		19.7
(-3)
A 		51
avr 17.5
(-2.7) 		49.3
(-0.2) 		31.5
(-1.6) 		61.3
(0.7) 		90.4
(3) 		14.2
(-3) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180056_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17518
Sequence Type Exemplar sequence
Representative Public ID F31A3.3 NCBI
Target Description F31A3.3 /REP_DB=WormBase Gene ID /WP=CE07160 /TR=Q19916 /GB=AAB36857.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078435(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078435 NCBI Caenorhabditis elegans F31A3.3 (F31A3.3) mRNA, complete cds. 11/11 None
SNAP00000018621 ENSEMBL cdna:SNAP chromosome:CEL140:X:17533154:17533974:-1 10/11 None
GENEFINDER00000018627 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17533154:17533974:-1 10/11 None
F31A3.3 ENSEMBL cdna:known chromosome:CEL140:X:17533154:17534135:-1 gene:F31A3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17533152-17534134(-) 93.56 100.0
Public Domain and Genome References
Gene Title
Ensembl F31A3.3
Entrez Gene 185135 Entrez gene
SwissProt Q19916 EMBL-EBI
WormBase CE07160 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB36857 Hypothetical protein F31A3.3 [Caenorhabditis elegans] ref|NP_510836.1| F31A3.3 [Caenorhabditis elegans] 6.0E-84
blast AAB36857 Hypothetical protein F31A3.3 [Caenorhabditis elegans] ref|NP_510836.1| F31A3.3 [Caenorhabditis elegans] 3.0E-75
blast CAE69947 Hypothetical protein CBG16333 [Caenorhabditis briggsae] 7.0E-33
blast CAE69947 Hypothetical protein CBG16333 [Caenorhabditis briggsae] 1.0E-32
blast CAE58693 Hypothetical protein CBG01871 [Caenorhabditis briggsae] 3.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510836.1 1 5-24
F31A3.3 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:180056_AT
ggtggtttgcacgttttatcatttttgtttcttttctcttttcttttctttttttttttt
taatgctttccgatgtaatcaagatttaaaaattttcaaatttcagatgaactcaatgga
aaatatggaaaattcatctattgcaaatttcaataatcgtaaatctagcaataacaacca
ggaaaatgctgttaatcagatggtagtgaaaaaacctatcaagagaaaaaccgccttgcc
attgcaagttcccgcaaaaaagttcaaagaagttgtagttgtcgagcagccgtctccgcc
taaaccaaccccatcagcttcaacaatgggaattgatataccgatggatccagactatag
ccgtttgccaaaagactttgaactgggaaacttggccagagagaaatttgcaggcatcgt
aaaggctgacctatccgaccgatatgaaattcaaatctactgccggctcttcgaacactt
ctcctactacccaatctacaaattcgatgaggacgtctggattgctgctcacgaccacgc
cgtaaaagaagtgatccgcttccgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGGTTTGCACGTTTTATCATTTT 526 499 15 Antisense
AACCGCCTTGCCATTGCAAGTTCCC 60 147 243 Antisense
AGTTGTAGTTGTCGAGCAGCCGTCT 288 63 285 Antisense
CCAACCCCATCAGCTTCAACAATGG 44 277 319 Antisense
TGGATCCAGACTATAGCCGTTTGCC 192 549 359 Antisense
TCGTAAAGGCTGACCTATCCGACCG 710 603 431 Antisense
TGAAATTCAAATCTACTGCCGGCTC 363 571 459 Antisense
CTCCTACTACCCAATCTACAAATTC 240 235 495 Antisense
TGAGGACGTCTGGATTGCTGCTCAC 401 567 522 Antisense
TGCTCACGACCACGCCGTAAAAGAA 463 477 540 Antisense
TAAAAGAAGTGATCCGCTTCCGCAC 51 641 557 Antisense
Sequence Source Affymetrix Proprietary Database