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[180055_at]

Description ZC328.1 /REP_DB=WormBase Gene ID /WP=CE27347 /TR=O02051 /GB=AAK39380.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 60      6grp_highest_nonorm > 62      6grp_total > 60      4grp_total > 48      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 888
1 2 3 4 range
A 27.1
(-3)
A 		537.2
(1.2)
P 		764.5
(3)
P 		82
(-2.6)
A 		737
B 64.2
(-3)
A 		477.2
(0.6)
P 		758.8
(3)
P 		101
(-2.7)
M 		695
C 51.1
(-3)
A 		471.7
(-0.1)
P 		915.3
(3)
P 		87.7
(-2.7)
P 		864
avr 47.5
(-3) 		495.4
(0.5) 		812.9
(3) 		90.2
(-2.7) 		765

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 755
1 2 3 4 5 6 range
A 390.3
(-1.2)
P 		306.3
(-2)
P 		559.2
(0.3)
P 		863.7
(3)
P 		340.8
(-1.6)
P 		188.8
(-3)
P 		675
B 418.9
(0.4)
P 		348.8
(-0.4)
P 		483.9
(1.2)
P 		640.6
(3)
P 		598.9
(2.5)
P 		132.3
(-3)
P 		508
C 577.9
(1.5)
P 		295.1
(-1.2)
P 		434
(0.1)
P 		732.9
(3)
P 		383.3
(-0.4)
P 		108.9
(-3)
P 		624
avr 462.4
(0.2) 		316.7
(-1.3) 		492.4
(0.5) 		745.7
(3) 		441
(-0) 		143.3
(-3) 		602
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 309
1 2 3 4 range
A 9.9
(-3)
A 		116.6
(0.4)
P 		199.8
(3)
P 		12
(-2.9)
A 		190
B 20.5
(-3)
A 		117.9
(0.8)
P 		175.8
(3)
P 		21.5
(-3)
M 		155
C 16.9
(-3)
A 		135.6
(-0.6)
P 		319
(3)
P 		14.8
(-3)
P 		304
avr 15.8
(-3) 		123.4
(-0) 		231.5
(3) 		16.1
(-3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 71.9
(-2.1)
P 		108.9
(-0.8)
P 		121.8
(-0.4)
P 		219.1
(3)
P 		102.8
(-1)
P 		46
(-3)
P 		173
B 145.8
(-0)
P 		116.1
(-0.9)
P 		117.5
(-0.9)
P 		169.7
(0.7)
P 		243.3
(3)
P 		49.3
(-3)
P 		194
C 214.2
(3)
P 		90
(-1.2)
P 		110.5
(-0.5)
P 		147.4
(0.7)
P 		124
(-0)
P 		36.5
(-3)
P 		178
avr 144
(1.5) 		105
(-0.3) 		116.6
(0.2) 		178.7
(3) 		156.7
(2) 		43.9
(-3) 		135
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180055_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1055
Sequence Type Exemplar sequence
Representative Public ID ZC328.1 NCBI
Target Description ZC328.1 /REP_DB=WormBase Gene ID /WP=CE27347 /TR=O02051 /GB=AAK39380.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059443
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZC328.1.2 ENSEMBL cdna:known chromosome:CEL140:I:6412720:6413816:1 gene:ZC328.1 None
ZC328.1.1 ENSEMBL cdna:known chromosome:CEL140:I:6412722:6413816:1 gene:ZC328.1 None
SNAP00000023530 ENSEMBL cdna:SNAP chromosome:CEL140:I:6412728:6413743:1 None
GENEFINDER00000023537 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6412728:6413743:1 None
NM_059443 NCBI Caenorhabditis elegans ZC328.1 (ZC328.1) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6411274-6413672(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC328.1
Entrez Gene 172340 Entrez gene
SwissProt O02051 EMBL-EBI
WormBase CE27347 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39380 Hypothetical protein ZC328.1 [Caenorhabditis elegans] ref|NP_491844.1| ZC328.1 [Caenorhabditis elegans] 1.0E-106
blast CAE67179 Hypothetical protein CBG12615 [Caenorhabditis briggsae] 5.0E-76
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491844.1 4 35-57,69-91,106-128,151-173
ZC328.1.2 4 35-57,69-91,106-128,151-173
ZC328.1.1 4 35-57,69-91,106-128,151-173
SNAP00000023530 4 35-57,69-91,106-128,151-173
GENEFINDER00000023537 4 35-57,69-91,106-128,151-173
Sequence
Target Sequence 
>C. ELEGANS:180055_AT
gttgtattgcagccatactacgagaagaatgacggaaacaatccacaaaccagataggtt
attccatttgaatttccatataattttcttattccgagcagtagaacctattcatttcac
aatttttaaaaaaaaacaattttcagtaatgagccacaaatcggattcaattggaaaatg
gttgttttatattcaagctggtattacggtactttctcttttaacaagtgctctaatggc
atttggactttggaaagaaaatccacagatgctaggatcaaaattgaaatttattgaatt
tataatctgtttcctcctgatctgggcggtcatttctattgtttgcatggcctttggaat
tcaattcacaagacaagtctttggaatatttggaaaagttcatcgaattgaacaagatta
cggaccaatttggccattcaacattgctgttgtttctttcttcactgctgcaattgctat
ttggacaagaatcatcattcaaggagctgctgattatctctacgataaagcttacttcgc
agacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTATTGCAGCCATACTACGAGA 486 429 24 Antisense
ATAATTTTCTTATTCCGAGCAGTAG 80 25 103 Antisense
GAGCAGTAGAACCTATTCATTTCAC 139 389 119 Antisense
GCTGGTATTACGGTACTTTCTCTTT 418 295 220 Antisense
TTTATAATCTGTTTCCTCCTGATCT 173 675 322 Antisense
GATCTGGGCGGTCATTTCTATTGTT 611 417 342 Antisense
ATTGTTTGCATGGCCTTTGGAATTC 674 3 361 Antisense
CGGACCAATTTGGCCATTCAACATT 700 241 444 Antisense
CAACATTGCTGTTGTTTCTTTCTTC 432 189 462 Antisense
GGAGCTGCTGATTATCTCTACGATA 376 521 526 Antisense
CGATAAAGCTTACTTCGCAGACAAG 205 249 546 Antisense
Sequence Source Affymetrix Proprietary Database