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[180054_at]

Description B0261.1 /REP_DB=WormBase Gene ID /WP=CE07704 /TR=O01441 /GB=AAB52350.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 28      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 70      6grp_total > 18      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 349.3
(3)
P 		205.7
(-3)
P 		225.7
(-2.2)
P 		257.4
(-0.8)
P 		144
B 391.1
(3)
P 		227
(-3)
P 		257.6
(-1.9)
P 		250.2
(-2.2)
P 		164
C 393.4
(3)
P 		255.9
(-2.1)
P 		231
(-3)
P 		277.7
(-1.3)
P 		162
avr 377.9
(3) 		229.5
(-3) 		238.1
(-2.7) 		261.8
(-1.7) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 314
(1.4)
P 		326.4
(2.2)
P 		246.8
(-3)
P 		258.5
(-2.2)
P 		287.8
(-0.3)
P 		339.2
(3)
P 		92
B 484.9
(3)
P 		289
(-1.2)
P 		311.2
(-0.7)
P 		202.9
(-3)
P 		259.1
(-1.8)
P 		309.4
(-0.7)
P 		282
C 456.1
(3)
P 		294.8
(-2.6)
P 		332.5
(-1.3)
P 		308
(-2.2)
P 		328
(-1.5)
P 		284.2
(-3)
P 		172
avr 418.3
(3) 		303.4
(-1.3) 		296.8
(-1.5) 		256.5
(-3) 		291.6
(-1.7) 		310.9
(-1) 		162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 127.2
(3)
P 		44.6
(-2.5)
P 		59
(-1.6)
P 		37.7
(-3)
P 		90
B 124.7
(3)
P 		56.1
(-2.8)
P 		59.7
(-2.5)
P 		53.3
(-3)
P 		71
C 130.2
(3)
P 		73.6
(-1.1)
P 		80.5
(-0.6)
P 		46.8
(-3)
P 		83
avr 127.4
(3) 		58.1
(-2.1) 		66.4
(-1.5) 		45.9
(-3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 57.9
(-2.6)
P 		116.1
(3)
P 		53.8
(-3)
P 		65.6
(-1.9)
P 		86.8
(0.2)
P 		82.6
(-0.2)
P 		62
B 168.7
(3)
P 		96.2
(-0.8)
P 		75.6
(-1.9)
P 		53.7
(-3)
P 		105.3
(-0.3)
P 		115.4
(0.2)
P 		115
C 169
(3)
P 		90
(-1.4)
P 		84.6
(-1.7)
P 		61.9
(-3)
P 		106.1
(-0.5)
P 		95.1
(-1.1)
P 		107
avr 131.9
(3) 		100.8
(0.4) 		71.3
(-2.1) 		60.4
(-3) 		99.4
(0.3) 		97.7
(0.1) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180054_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1046
Sequence Type Exemplar sequence
Representative Public ID B0261.1 NCBI
Target Description B0261.1 /REP_DB=WormBase Gene ID /WP=CE07704 /TR=O01441 /GB=AAB52350.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059152(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059152 NCBI Caenorhabditis elegans B0261.1 (B0261.1) mRNA, complete cds. 11/11 None
GENEFINDER00000040723 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5245814:5268119:1 11/11 None
SNAP00000040717 ENSEMBL cdna:SNAP chromosome:CEL140:I:5263711:5270085:1 11/11 None
B0261.1.2 ENSEMBL cdna:known chromosome:CEL140:I:5263696:5268380:1 gene:B0261.1 11/11 None
B0261.1.1 ENSEMBL cdna:known chromosome:CEL140:I:5263697:5268380:1 gene:B0261.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5263710-5268119(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0261.1
Entrez Gene 172168 Entrez gene
SwissProt O01441 EMBL-EBI
WormBase CE29531 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1590939_AT similar to transcription factor-like nuclear regulator cfa
CANINE_2:CFA.11173.1.A1_S_AT similar to transcription factor-like nuclear regulator cfa
CANINE_2:CFAAFFX.12564.1.S1_AT similar to transcription factor-like nuclear regulator cfa
CHICKEN:GGAAFFX.1633.1.S1_AT similar to transcription factor-like nuclear regulator; putative transcription regulation nuclear protein; putative transcription factor-like nuclear regulator; TATA box binding protein (TBP)-associated factor, RNA polymerase III, GTF3B subunit 1; ... gga
CHICKEN:GGAAFFX.1661.1.S1_AT similar to transcription factor-like nuclear regulator; putative transcription regulation nuclear protein; putative transcription factor-like nuclear regulator; TATA box binding protein (TBP)-associated factor, RNA polymerase III, GTF3B subunit 1; ... gga
CHICKEN:GGAAFFX.1665.1.S1_AT similar to transcription factor-like nuclear regulator; putative transcription regulation nuclear protein; putative transcription factor-like nuclear regulator; TATA box binding protein (TBP)-associated factor, RNA polymerase III, GTF3B subunit 1; ... gga
HG-U133_PLUS_2:226290_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
HG-U133B:226290_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
HG-U133_PLUS_2:224227_S_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
HG-U133B:224227_S_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
HG-U133_PLUS_2:231939_S_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
HG-U133B:231939_S_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
HU35KSUBB:RC_N67220_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
HU35KSUBD:RC_H99837_S_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
U133_X3P:G11096172_3P_X_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
U133_X3P:G11096172_3P_A_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
U133_X3P:HS.272808.2.A1_3P_A_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
U133_X3P:HS.272808.1.A1_3P_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
HG-U95C:64887_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
MG-U74BV2:106953_I_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB mm
MG-U74BV2:111812_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB mm
MG-U74BV2:106954_F_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB mm
MOE430B:1434284_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB mm
MOUSE430_2:1434284_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB mm
MOE430B:1437919_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB mm
MOUSE430_2:1437919_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB mm
RG-U34B:RC_AI059173_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB (predicted) rn
RG-U34B:RC_AA942714_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52350 Hypothetical protein B0261.1 [Caenorhabditis elegans] ref|NP_491553.1| B0261.1 [Caenorhabditis elegans] 0.0
blast Q95Q95 Target of rapamycin homolog (CeTOR) (Lethal protein 363) pir||T25444 hypothetical protein B0261.2 - Caenorhabditis elegans 0.0
blast AAN84885 Lethal protein 363, isoform a [Caenorhabditis elegans] ref|NP_491549.2| LEThal family member (let-363) [Caenorhabditis elegans] 0.0
blast AAN84886 Lethal protein 363, isoform b [Caenorhabditis elegans] ref|NP_491552.2| LEThal family member (let-363) [Caenorhabditis elegans] 0.0
blast CAE67376 Hypothetical protein CBG12854 [Caenorhabditis briggsae] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 2.5E-4
Pfam IPR000403 EMBL-EBI Phosphatidylinositol 3- and 4-kinase 1.1E-104
Pfam IPR003152 EMBL-EBI PIK-related kinase, FATC 4.6E-16
Pfam IPR003151 EMBL-EBI PIK-related kinase, FAT 1.0E-126
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 2.5E-4
Sequence
Target Sequence 
>C. ELEGANS:180054_AT
gaagcctgtttatgtcgatactactgatccaaaatatgcgcaacaaaaggtttctcgtgc
tgtcgagatggtactgaaggccaatggaaatatgtttgatagtgccggcgaacaagatga
tgatttccccgatccagacgaaatggaaacttcagctgaacctgtcgttgttgaagaagt
agctccagatccaactccaccaccacctgagaacatggaagagaatgtggtagaagaatc
cgttcctcaatcagttatcgatgtagttgaagaaattatgagaggcagaagcaagacacc
agttgaaacggcagtgaagcctttagaaaatacggaagaaagtaaaaccgatggagagga
tagaaagaaaaggagtgctgatgtggattctggcggaccctctccaaaagttgctaggct
agaaggggttgatgttcccgttgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCTGTTTATGTCGATACTACT 579 343 1608 Antisense
AACAAAAGGTTTCTCGTGCTGTCGA 280 113 1649 Antisense
GTGCTGTCGAGATGGTACTGAAGGC 678 477 1664 Antisense
ACAAGATGATGATTTCCCCGATCCA 570 113 1719 Antisense
AACTTCAGCTGAACCTGTCGTTGTT 445 139 1755 Antisense
CTCCACCACCACCTGAGAACATGGA 497 235 1802 Antisense
AGAATCCGTTCCTCAATCAGTTATC 165 73 1842 Antisense
GCAAGACACCAGTTGAAACGGCAGT 485 319 1898 Antisense
TGCTGATGTGGATTCTGGCGGACCC 178 583 1983 Antisense
GGACCCTCTCCAAAAGTTGCTAGGC 299 521 2002 Antisense
GAAGGGGTTGATGTTCCCGTTGAAG 555 159 2029 Antisense
Sequence Source Affymetrix Proprietary Database