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[180053_at]

Description K07H8.5 /REP_DB=WormBase Gene ID /WP=CE18025 /TR=O45178 /GB=AAC04424.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 0      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 29.5
(-2.5)
A 		22.6
(-3)
A 		58.5
(-0.3)
A 		101.3
(3)
P 		79
B 52.3
(1.5)
P 		19.8
(-3)
A 		63.1
(3)
P 		60.5
(2.6)
P 		43
C 65.4
(-0.4)
P 		34.7
(-3)
A 		58.6
(-1)
P 		105.5
(3)
P 		71
avr 49.1
(-0.8) 		25.7
(-3) 		60.1
(0.3) 		89.1
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 15.1
(-3)
A 		37.7
(-0.8)
A 		72.7
(2.6)
A 		54.9
(0.9)
A 		76.8
(3)
P 		65.3
(1.9)
P 		62
B 51
(-3)
M 		63.8
(-1)
P 		58.8
(-1.8)
P 		56.9
(-2.1)
A 		67.2
(-0.5)
P 		89.8
(3)
P 		39
C 26.5
(-3)
A 		41.4
(-1.9)
P 		33.3
(-2.5)
A 		87
(1.6)
P 		57.3
(-0.7)
A 		105.4
(3)
P 		79
avr 30.9
(-3) 		47.6
(-1.2) 		54.9
(-0.4) 		66.3
(0.8) 		67.1
(0.9) 		86.8
(3) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.8
(0.4)
A 		4.9
(-3)
A 		15.3
(3)
A 		14.8
(2.7)
P 		10
B 16.7
(3)
P 		4.9
(-3)
A 		14.6
(1.9)
P 		12.9
(1.1)
P 		12
C 21.6
(3)
P 		10
(-3)
A 		20.4
(2.4)
P 		17.8
(1)
P 		12
avr 16.4
(2.8) 		6.6
(-3) 		16.8
(3) 		15.2
(2.1) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 2.8
(-3)
A 		13.4
(0.1)
A 		15.8
(0.8)
A 		13.9
(0.3)
A 		23.2
(3)
P 		15.9
(0.9)
P 		20
B 17.7
(-1.9)
M 		21.2
(-0.8)
P 		14.3
(-3)
P 		15.1
(-2.8)
A 		27.3
(1.1)
P 		33.5
(3)
P 		19
C 9.8
(-2.7)
A 		12.6
(-2.1)
P 		8.5
(-3)
A 		17.5
(-1)
P 		18.5
(-0.8)
A 		35.3
(3)
P 		27
avr 10.1
(-3) 		15.7
(-1.1) 		12.9
(-2.1) 		15.5
(-1.2) 		23
(1.3) 		28.2
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180053_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9329
Sequence Type Exemplar sequence
Representative Public ID K07H8.5 NCBI
Target Description K07H8.5 /REP_DB=WormBase Gene ID /WP=CE18025 /TR=O45178 /GB=AAC04424.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068987(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068987 NCBI Caenorhabditis elegans K07H8.5 (K07H8.5) mRNA, complete cds. 11/11 None
K07H8.5 ENSEMBL cdna:known chromosome:CEL140:IV:8271052:8273130:1 gene:K07H8.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006914 7/11 Cross Hyb Matching Probes None
GENEFINDER00000006925 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8271057-8273136(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07H8.5
Entrez Gene 187126 Entrez gene
SwissProt O45178 EMBL-EBI
WormBase CE18025 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04424 Hypothetical protein K07H8.5 [Caenorhabditis elegans] ref|NP_501388.1| K07H8.5 [Caenorhabditis elegans] 0.0
blast CAB03147 Hypothetical protein F58D2.2 [Caenorhabditis elegans] ref|NP_502536.1| F58D2.2 [Caenorhabditis elegans] 1.0E-35
blast CAE63931 Hypothetical protein CBG08508 [Caenorhabditis briggsae] 6.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501388.1 1 284-306
K07H8.5 1 284-306
Sequence
Target Sequence 
>C. ELEGANS:180053_AT
gttccgccagttcgttacattaataatcccgattatcaaactggtagcaacgaggaggaa
aatcctaatacatatactcctggaaagtggtgggcatggggattatttgttggtttcatt
attggatcacttctcgggactgttattatcggtggaattttctacgttctgagaagaaca
gtgtatggattctggtaccgcggcatgtacaaacgttacggttgtgatgcttcgggaaca
actggtggaatcactggagttggattcggaaacactacaaccggagcaattaccgttggt
ggaaccacgggaggcgcaacaacagccggaactactggtggcactactggatcatctaca
acaactggaggtgccagcaccattgcaatctccaacggatgctcagagcaaaacaagcgg
cgtgctatcggtgctctcggaacatgtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCGCCAGTTCGTTACATTAATA 267 441 760 Antisense
TTATTGGATCACTTCTCGGGACTGT 664 677 878 Antisense
CAGTGTATGGATTCTGGTACCGCGG 554 203 938 Antisense
GAAACACTACAACCGGAGCAATTAC 84 357 1028 Antisense
CACGGGAGGCGCAACAACAGCCGGA 516 197 1065 Antisense
AACAGCCGGAACTACTGGTGGCACT 473 135 1080 Antisense
TGGTGGCACTACTGGATCATCTACA 502 553 1095 Antisense
GAGGTGCCAGCACCATTGCAATCTC 210 403 1127 Antisense
GCAATCTCCAACGGATGCTCAGAGC 292 323 1144 Antisense
AAACAAGCGGCGTGCTATCGGTGCT 513 129 1170 Antisense
CTATCGGTGCTCTCGGAACATGTGT 670 223 1184 Antisense
Sequence Source Affymetrix Proprietary Database