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[180051_at]

Description K09F5.1 /REP_DB=WormBase Gene ID /WP=CE02818 /TR=Q21405 /GB=AAB52672.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 17      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 10.9
(-3)
A 		29.7
(-0.2)
A 		51.6
(3)
A 		38.1
(1)
A 		41
B 47.4
(-1.8)
A 		45.8
(-2.1)
A 		40.2
(-3)
A 		76.5
(3)
A 		36
C 31.5
(-1.4)
A 		48.5
(1.8)
A 		22.8
(-3)
A 		54.7
(3)
A 		32
avr 29.9
(-3) 		41.3
(-0.4) 		38.2
(-1.1) 		56.4
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 16.3
(-1.1)
A 		13.8
(-1.4)
A 		21.9
(-0.2)
A 		3.8
(-3)
A 		32
(1.4)
A 		42.5
(3)
A 		39
B 42.3
(1.8)
A 		49.1
(3)
A 		15.5
(-2.8)
A 		27.9
(-0.7)
A 		14.4
(-3)
A 		30.8
(-0.2)
A 		35
C 43.3
(3)
A 		30.9
(1.1)
A 		30.1
(1)
A 		41.6
(2.7)
A 		4.3
(-3)
A 		6
(-2.7)
A 		39
avr 34
(3) 		31.3
(2.1) 		22.5
(-1) 		24.4
(-0.4) 		16.9
(-3) 		26.4
(0.3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4
(-3)
A 		6.4
(-1.5)
A 		13.5
(3)
A 		5.6
(-2)
A 		10
B 15.1
(2)
A 		11.3
(-1.3)
A 		9.3
(-3)
A 		16.3
(3)
A 		7
C 10.4
(-0.6)
A 		13.9
(3)
A 		8
(-3)
A 		9.2
(-1.8)
A 		6
avr 9.8
(-3) 		10.5
(3) 		10.3
(1.3) 		10.4
(2.1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3
(-1.7)
A 		4.9
(-0.5)
A 		4.8
(-0.6)
A 		1
(-3)
A 		9.6
(2.5)
A 		10.4
(3)
A 		9
B 14.7
(2.2)
A 		16.4
(3)
A 		3.8
(-3)
A 		7.4
(-1.3)
A 		5.8
(-2)
A 		11.5
(0.7)
A 		13
C 16.1
(3)
A 		9.4
(0.3)
A 		7.7
(-0.4)
A 		8.4
(-0.1)
A 		1.4
(-3)
A 		2
(-2.8)
A 		15
avr 11.3
(3) 		10.2
(1.9) 		5.4
(-3) 		5.6
(-2.8) 		5.6
(-2.8) 		8
(-0.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180051_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16186
Sequence Type Exemplar sequence
Representative Public ID K09F5.1 NCBI
Target Description K09F5.1 /REP_DB=WormBase Gene ID /WP=CE02818 /TR=Q21405 /GB=AAB52672.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076906(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076906 NCBI Caenorhabditis elegans K09F5.1 (K09F5.1) mRNA, complete cds. 11/11 None
K09F5.1 ENSEMBL cdna:known chromosome:CEL140:X:7739592:7741845:1 gene:K09F5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000026498 7/11 Cross Hyb Matching Probes None
SNAP00000026494 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7739590-7741844(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09F5.1
Entrez Gene 187227 Entrez gene
SwissProt Q21405 EMBL-EBI
WormBase CE02818 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509307 K09F5.1 [Caenorhabditis elegans] gb|AAB52672.1| Hypothetical protein K09F5.1 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509307.1 1 362-384
K09F5.1 1 362-384
Sequence
Target Sequence 
>C. ELEGANS:180051_AT
ttcacattgacagcaaccctcagttcgctaacactgccgatgaacttttcaaaaagtttg
tcttcaaggaatttctaaataagttgagaggaaaaccagtaaacaaaaagtggagagtct
accttgaagaattgaaagacgaagaaaataaaaaagctatcaaattgaatatgctcacaa
aaagaattggtggaaaaatggaaaaatcggttgtcaaaaaagcgattcagttagaaactc
cagtgagttctgctgctaaacgaaattttggaaatctcggtgctcccaaccctcgggtcg
gaaaaataaaatcagaaggaacagtcactccaccaatctttaaaatctcaaagcacactg
gctcactgaaatcactgaagaaggcaacacctcttttggcgaaatgcaaaaaaatgtgtg
gccgaaaaatttccctatgcgtgacttctctatttttcatatatatatgtgttctcgaca
atcaagtgagcatctggaaaccttactacatttctcagctcttttttgaactcttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACATTGACAGCAACCCTCAGTT 354 685 668 Antisense
CTCAGTTCGCTAACACTGCCGATGA 538 227 686 Antisense
ACTCCAGTGAGTTCTGCTGCTAAAC 381 99 904 Antisense
TTTTGGAAATCTCGGTGCTCCCAAC 159 679 933 Antisense
GTCACTCCACCAATCTTTAAAATCT 292 465 991 Antisense
AGCACACTGGCTCACTGAAATCACT 256 77 1019 Antisense
GGCAACACCTCTTTTGGCGAAATGC 90 535 1050 Antisense
AAAATTTCCCTATGCGTGACTTCTC 219 127 1093 Antisense
GCGTGACTTCTCTATTTTTCATATA 232 293 1106 Antisense
GAAACCTTACTACATTTCTCAGCTC 431 359 1164 Antisense
TCTCAGCTCTTTTTTGAACTCTTCC 44 613 1180 Antisense
Sequence Source Affymetrix Proprietary Database