[Home] | [Total List]

[180050_at]

Description Y68A4A.5 /REP_DB=WormBase Gene ID /WP=CE19256 /TR=Q9XXQ2 /GB=CAA16417.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 4.7
(-2.8)
A 		2.7
(-3)
A 		5.1
(-2.8)
A 		66.8
(3)
A 		64
B 3.8
(-1.9)
A 		5.2
(-1.1)
A 		12.6
(3)
A 		1.8
(-3)
A 		11
C 4.6
(1.9)
A 		5.2
(3)
A 		5
(2.6)
A 		1.9
(-3)
A 		3
avr 4.4
(-3) 		4.4
(-3) 		7.6
(-2) 		23.5
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 3.6
(-2.8)
A 		11.4
(3)
A 		3.4
(-2.9)
A 		4
(-2.5)
A 		3.6
(-2.8)
A 		3.3
(-3)
A 		8
B 8.2
(1.1)
A 		3
(-2.8)
A 		4.5
(-1.7)
A 		10.8
(3)
A 		2.8
(-2.9)
A 		2.7
(-3)
A 		8
C 2.8
(-3)
A 		3.6
(-2.7)
A 		6.8
(-1.7)
A 		8
(-1.3)
A 		20.9
(3)
A 		3
(-2.9)
A 		18
avr 4.9
(-1.1) 		6
(-0) 		4.9
(-1.1) 		7.6
(1.5) 		9.1
(3) 		3
(-3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.7
(-2.3)
A 		0.6
(-3)
A 		1.3
(-2.5)
A 		9.8
(3)
A 		9
B 1.2
(-1.1)
A 		1.3
(-0.8)
A 		2.9
(3)
A 		0.4
(-3)
A 		3
C 1.5
(1.8)
A 		1.5
(1.8)
A 		1.8
(3)
A 		0.3
(-3)
A 		2
avr 1.5
(-2) 		1.1
(-3) 		2
(-0.8) 		3.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.7
(-3)
A 		4
(3)
A 		0.8
(-2.8)
A 		1
(-2.5)
A 		1.1
(-2.3)
A 		0.8
(-2.8)
A 		3
B 2.8
(2.7)
A 		1
(-3)
A 		1.1
(-2.7)
A 		2.9
(3)
A 		1.1
(-2.7)
A 		1
(-3)
A 		2
C 1
(-3)
A 		1.1
(-2.9)
A 		1.7
(-2.3)
A 		1.6
(-2.4)
A 		6.8
(3)
A 		1
(-3)
A 		6
avr 1.5
(-1.3) 		2
(0.1) 		1.2
(-2.1) 		1.8
(-0.4) 		3
(3) 		0.9
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180050_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14376
Sequence Type Exemplar sequence
Representative Public ID Y68A4A.5 NCBI
Target Description Y68A4A.5 /REP_DB=WormBase Gene ID /WP=CE19256 /TR=Q9XXQ2 /GB=CAA16417.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074954(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074954 NCBI Caenorhabditis elegans Y68A4A.5 (Y68A4A.5) mRNA, complete cds. 11/11 None
Y68A4A.5 ENSEMBL cdna:known chromosome:CEL140:V:17196163:17201580:-1 gene:Y68A4A.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011459 4/11 Cross Hyb Matching Probes None
GENEFINDER00000011470 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17196162-17201580(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y68A4A.5
Entrez Gene 190525 Entrez gene
SwissProt Q9XXQ2 EMBL-EBI
WormBase CE19256 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16417 Hypothetical protein Y68A4A.5 [Caenorhabditis elegans] ref|NP_507355.1| Y68A4A.5 [Caenorhabditis elegans] 0.0
blast CAA16424 Hypothetical protein Y68A4A.10a [Caenorhabditis elegans] ref|NP_001024276.1| Y68A4A.10a [Caenorhabditis elegans] 1.0E-112
blast CAB04138 Hypothetical protein F20E11.7 [Caenorhabditis elegans] ref|NP_507421.1| F20E11.7 [Caenorhabditis elegans] 6.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 6.0E-54
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 5.0E-21
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 3.9E-20
Sequence
Target Sequence 
>C. ELEGANS:180050_AT
acatgagccaaatagtccacgtccaaaacggctaataagtgctaatgataattttaacta
tactgaccatctgcaaatcaccggaggcgcattaacgtttactggcacagggcaagcgca
aattgcagagacgtctgtcacttgtgggagtgatgcaatttggcaagatccgaatggaat
tcgaggaaacacgttgattgcgagcattgctcctcagacttgtcttccatgccagacctg
cacctcattcacggaccctatgggcgctcatgcctcatgcattgccacctatggcacaaa
tagcgacggttgcaccacacttgcagtcaaatgtacgataaatgctggattcgaatgtga
tatagctaaatgcatggcaaacgctgcatacgaatgttatgacgcaaattcgagggaaca
cgttgattgcaagcattacccctcagacttgtgtaagctgccatgcaaactagacttgaa
gcgcggccgctttttcaagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATGAGCCAAATAGTCCACGTCCA 128 105 861 Antisense
AATTTTAACTATACTGACCATCTGC 84 175 910 Antisense
TGACCATCTGCAAATCACCGGAGGC 589 569 924 Antisense
GTTTACTGGCACAGGGCAAGCGCAA 632 449 957 Antisense
TTGCGAGCATTGCTCCTCAGACTTG 407 703 1058 Antisense
GCCTCATGCATTGCCACCTATGGCA 708 269 1132 Antisense
CAAATAGCGACGGTTGCACCACACT 680 193 1157 Antisense
GTTGATTGCAAGCATTACCCCTCAG 658 437 1282 Antisense
GTGTAAGCTGCCATGCAAACTAGAC 103 487 1311 Antisense
CAAACTAGACTTGAAGCGCGGCCGC 227 189 1326 Antisense
TGAAGCGCGGCCGCTTTTTCAAGTC 606 571 1337 Antisense
Sequence Source Affymetrix Proprietary Database