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[180049_at]

Description Y62H9A.8 /REP_DB=WormBase Gene ID /WP=CE19244 /TR=Q9XWT1 /GB=CAA21564.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 48.4
(1)
A 		63.8
(3)
A 		18.7
(-3)
A 		46.9
(0.8)
A 		45
B 19.6
(0.1)
A 		32.6
(3)
A 		9.3
(-2.2)
A 		5.6
(-3)
A 		27
C 37.6
(-1.4)
A 		7.4
(-2.9)
A 		4.5
(-3)
A 		127.2
(3)
A 		123
avr 35.2
(-0) 		34.6
(-0.1) 		10.8
(-3) 		59.9
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 14.1
(-3)
A 		22.4
(-1.1)
A 		23.3
(-0.9)
A 		40.7
(3)
A 		34.4
(1.6)
A 		14.9
(-2.8)
A 		27
B 24.7
(-0.2)
A 		46.2
(3)
A 		5.9
(-3)
A 		41.4
(2.3)
A 		37.9
(1.8)
A 		22.2
(-0.6)
A 		40
C 16.6
(-1.5)
A 		39.8
(2.3)
A 		7.7
(-3)
A 		35.3
(1.5)
A 		44.3
(3)
A 		14.7
(-1.9)
A 		37
avr 18.5
(-1.6) 		36.1
(2.3) 		12.3
(-3) 		39.1
(3) 		38.9
(3) 		17.3
(-1.9) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 17.6
(3)
A 		13.8
(1.2)
A 		4.9
(-3)
A 		6.9
(-2.1)
A 		13
B 6.3
(1.5)
A 		8
(3)
A 		2.2
(-2.1)
A 		1.2
(-3)
A 		7
C 12.5
(0.3)
A 		2.1
(-2.8)
A 		1.6
(-3)
A 		21.4
(3)
A 		20
avr 12.1
(3) 		8
(0.3) 		2.9
(-3) 		9.8
(1.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.6
(-3)
A 		8
(1.2)
A 		5.1
(-1.1)
A 		10.3
(2.9)
A 		10.4
(3)
A 		3.6
(-2.2)
A 		8
B 8.6
(0.1)
A 		15.4
(3)
A 		1.4
(-3)
A 		11
(1.1)
A 		15.4
(3)
A 		8.3
(-0)
A 		14
C 6.2
(-0.9)
A 		12.1
(1.9)
A 		1.9
(-3)
A 		7.1
(-0.5)
A 		14.3
(3)
A 		4.9
(-1.5)
A 		12
avr 5.8
(-1.3) 		11.8
(2.1) 		2.8
(-3) 		9.5
(0.8) 		13.4
(3) 		5.6
(-1.4) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180049_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16441
Sequence Type Exemplar sequence
Representative Public ID Y62H9A.8 NCBI
Target Description Y62H9A.8 /REP_DB=WormBase Gene ID /WP=CE19244 /TR=Q9XWT1 /GB=CAA21564.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077588(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077588 NCBI Caenorhabditis elegans Y62H9A.8 (Y62H9A.8) mRNA, complete cds. 11/11 None
SNAP00000025460 ENSEMBL cdna:SNAP chromosome:CEL140:X:11891180:11892343:-1 9/11 None
GENEFINDER00000025479 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11891180:11892343:-1 11/11 None
Y62H9A.8 ENSEMBL cdna:known chromosome:CEL140:X:11891180:11892343:-1 gene:Y62H9A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11891179-11892343(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y62H9A.8
Entrez Gene 190463 Entrez gene
SwissProt Q9XWT1 EMBL-EBI
WormBase CE19244 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21564 Hypothetical protein Y62H9A.8 [Caenorhabditis elegans] ref|NP_509989.1| Y62H9A.8 [Caenorhabditis elegans] 6.0E-88
blast CAA21564 Hypothetical protein Y62H9A.8 [Caenorhabditis elegans] ref|NP_509989.1| Y62H9A.8 [Caenorhabditis elegans] 7.0E-60
blast CAE69407 Hypothetical protein CBG15567 [Caenorhabditis briggsae] 1.0E-20
blast CAI79148 Hypothetical protein C44C10.12 [Caenorhabditis elegans] ref|NP_001024461.1| C44C10.12 [Caenorhabditis elegans] 5.0E-13
Sequence
Target Sequence 
>C. ELEGANS:180049_AT
tggccatgtgtcgcggcggtaacaaggcaatctgtgcagcagcgtatgggcttcgagttg
cgtctggatcagactgccttgatctctacatgatgggagatattgaaattgatgatatga
ctagatgtattattcataacaacgaacttcatgattgttggacatacgaacagcttggac
acctcacacgaattatggaaacacgcgagtatcttttcgactaccagtacaacatgatac
aaataataaaatcaatcgagaaaaaagttgatgagtacaactacttcaaaatgatcagta
gccagcctcaattagcaagtccagatatgagccaatcacctccactactggaaacgtcca
cagataattctgataacataacttcatcagaaaagacggtggaactcgagattattcatg
attcacacgtcgaacttccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCCATGTGTCGCGGCGGTAACAA 667 543 14 Antisense
GGCAATCTGTGCAGCAGCGTATGGG 149 535 39 Antisense
AGCGTATGGGCTTCGAGTTGCGTCT 317 77 54 Antisense
GTTGCGTCTGGATCAGACTGCCTTG 201 439 70 Antisense
GACTGCCTTGATCTCTACATGATGG 497 375 85 Antisense
GACATACGAACAGCTTGGACACCTC 70 369 174 Antisense
GCGAGTATCTTTTCGACTACCAGTA 632 289 218 Antisense
GTAGCCAGCCTCAATTAGCAAGTCC 18 459 311 Antisense
AGATATGAGCCAATCACCTCCACTA 694 65 336 Antisense
CACCTCCACTACTGGAAACGTCCAC 423 201 350 Antisense
CATGATTCACACGTCGAACTTCCAT 389 209 430 Antisense
Sequence Source Affymetrix Proprietary Database