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[180048_at]

Description T06D10.1 /REP_DB=WormBase Gene ID /WP=CE25101 /TR=Q9U379 /GB=CAB63307.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 31      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 42      6grp_total > 23      4grp_total > 54      6grp_highest_sub > 01_02_03      6grp_high1_sub > 03      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1089
1 2 3 4 range
A 1385.2
(3)
P 		755.6
(-1.9)
P 		623.6
(-2.9)
P 		612.1
(-3)
P 		773
B 1438.5
(3)
P 		946.5
(-0)
P 		678.2
(-1.7)
P 		466.5
(-3)
P 		972
C 1555
(3)
P 		849
(-1.3)
P 		836.5
(-1.3)
P 		559.2
(-3)
P 		996
avr 1459.6
(3) 		850.4
(-1) 		712.8
(-1.9) 		545.9
(-3) 		914

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 820
1 2 3 4 5 6 range
A 920.4
(1.8)
P 		889.4
(1.5)
P 		1058.2
(3)
P 		656.1
(-0.6)
P 		425.1
(-2.6)
P 		381.3
(-3)
P 		677
B 1050.1
(2.4)
P 		876.3
(1.1)
P 		1133.8
(3)
P 		604.7
(-0.9)
P 		314.1
(-3)
P 		398.3
(-2.4)
P 		820
C 856.1
(1.6)
P 		900.1
(2)
P 		995
(3)
P 		638.7
(-0.7)
P 		409.6
(-3)
P 		454.4
(-2.5)
P 		585
avr 942.2
(1.9) 		888.6
(1.5) 		1062.3
(3) 		633.2
(-0.8) 		382.9
(-3) 		411.3
(-2.7) 		679
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 425
1 2 3 4 range
A 504.3
(3)
P 		164
(-1.9)
P 		163
(-1.9)
P 		89.6
(-3)
P 		415
B 458.7
(3)
P 		233.8
(-0.8)
P 		157.2
(-2)
P 		99.4
(-3)
P 		359
C 514.7
(3)
P 		244.1
(-0.9)
P 		291.6
(-0.2)
P 		94.3
(-3)
P 		420
avr 492.6
(3) 		214
(-1.2) 		203.9
(-1.4) 		94.4
(-3) 		398

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 169.7
(-0.9)
P 		316.3
(3)
P 		230.4
(0.7)
P 		166.4
(-1)
P 		128.3
(-2)
P 		92.8
(-3)
P 		224
B 365.4
(3)
P 		291.7
(1.1)
P 		275.3
(0.7)
P 		160.2
(-2.2)
P 		127.6
(-3)
P 		148.5
(-2.5)
P 		238
C 317.3
(3)
P 		274.6
(1.6)
P 		253.2
(1)
P 		128.4
(-3)
P 		132.5
(-2.9)
P 		152.1
(-2.2)
P 		189
avr 284.1
(2.6) 		294.2
(3) 		253
(1.5) 		151.7
(-2.2) 		129.5
(-3) 		131.1
(-2.9) 		165
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180048_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1002
Sequence Type Exemplar sequence
Representative Public ID T06D10.1 NCBI
Target Description T06D10.1 /REP_DB=WormBase Gene ID /WP=CE25101 /TR=Q9U379 /GB=CAB63307.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060038(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060038 NCBI Caenorhabditis elegans T06D10.1 (T06D10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000013474 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9079802:9081552:-1 9/11 None
T06D10.1.1 ENSEMBL cdna:known chromosome:CEL140:I:9078385:9083201:-1 gene:T06D10.1 11/11 None
T06D10.1.2 ENSEMBL cdna:known chromosome:CEL140:I:9079802:9083203:-1 gene:T06D10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013470 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9079732-9082679(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06D10.1
Entrez Gene 172729 Entrez gene
SwissProt Q9U379 EMBL-EBI
WormBase CE25101 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63307 Hypothetical protein T06D10.1 [Caenorhabditis elegans] ref|NP_492439.1| T06D10.1 [Caenorhabditis elegans] 1.0E-93
blast CAE67034 Hypothetical protein CBG12436 [Caenorhabditis briggsae] 9.0E-92
blast CAB63307 Hypothetical protein T06D10.1 [Caenorhabditis elegans] ref|NP_492439.1| T06D10.1 [Caenorhabditis elegans] 2.0E-85
blast CAE67034 Hypothetical protein CBG12436 [Caenorhabditis briggsae] 1.0E-83
Sequence
Target Sequence 
>C. ELEGANS:180048_AT
acagcattccatggccaatccaaagaaaatacaggagctggtgcacgagtgcaacgtgca
acttgcactcttccgtgtagcaacacaaggaatcggaaccgcccaagatggtgcatcatt
aaggagggaagtcgaaacagcgggtcgagcctgtcagaaagcagttgaagcagcaaataa
tgttgttcttccgcagttaagggcagatgaagcagaaatagctcgtcatggatcattatt
tattggatgtgttggtgcatatctgatagaaatgaaacgttgtgtaaagttggaaaaaac
atttcctgctccaacagaaccatcagtaacacctcaacaagtggaaagagttgaagtcat
tttggatactcttgagaatttaataacggtgcattattcgacaaatgagcaaccgtgttt
ggataagttgcaagtaacaccacgaagaaggagagccacatcgtgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGCATTCCATGGCCAATCCAAAG 50 109 18 Antisense
ATACAGGAGCTGGTGCACGAGTGCA 435 19 46 Antisense
GCAACGTGCAACTTGCACTCTTCCG 560 319 68 Antisense
TGCACTCTTCCGTGTAGCAACACAA 380 575 81 Antisense
GAATCGGAACCGCCCAAGATGGTGC 120 327 107 Antisense
TCGAAACAGCGGGTCGAGCCTGTCA 288 601 149 Antisense
GTTGTTCTTCCGCAGTTAAGGGCAG 572 323 199 Antisense
GAAATAGCTCGTCATGGATCATTAT 437 363 232 Antisense
CATTTCCTGCTCCAACAGAACCATC 436 215 317 Antisense
GAACCATCAGTAACACCTCAACAAG 637 345 334 Antisense
GAAGAAGGAGAGCCACATCGTGTCG 577 339 461 Antisense
Sequence Source Affymetrix Proprietary Database