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[180047_at]

Description Y40B1B.8 /REP_DB=WormBase Gene ID /WP=CE24254 /TR=Q9U2J0 /GB=CAA21607.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 71      6grp_total > 93      4grp_total > 61      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 324.8
(1.1)
P 		367
(3)
P 		356.5
(2.5)
P 		231.8
(-3)
P 		135
B 354.8
(3)
P 		291.9
(0.7)
P 		351.1
(2.9)
P 		192.6
(-3)
P 		162
C 352.7
(3)
P 		264.4
(-3)
P 		286.9
(-1.5)
P 		273.1
(-2.4)
P 		88
avr 344.1
(3) 		307.8
(1) 		331.5
(2.3) 		232.5
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 316.1
(0.7)
P 		328.2
(1.2)
P 		335.5
(1.4)
P 		220.3
(-3)
P 		375.7
(3)
P 		326.5
(1.1)
P 		155
B 341.5
(-1.6)
P 		373
(0.3)
P 		348
(-1.2)
P 		350.4
(-1.1)
P 		418.6
(3)
P 		317.7
(-3)
P 		101
C 310
(-3)
P 		383
(0.8)
P 		330.7
(-1.9)
P 		424.7
(3)
P 		349.7
(-0.9)
P 		334.4
(-1.7)
P 		115
avr 322.5
(-3) 		361.4
(1) 		338.1
(-1.4) 		331.8
(-2.1) 		381.3
(3) 		326.2
(-2.6) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 118.2
(3)
P 		79.7
(0.3)
P 		93.2
(1.2)
P 		33.9
(-3)
P 		84
B 113.1
(3)
P 		72.1
(-0.4)
P 		81.4
(0.4)
P 		41
(-3)
P 		72
C 116.8
(3)
P 		76
(-0.5)
P 		100
(1.6)
P 		46
(-3)
P 		71
avr 116
(3) 		75.9
(-0.2) 		91.5
(1.1) 		40.3
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 58.3
(-2.8)
P 		116.7
(3)
P 		73.1
(-1.3)
P 		55.9
(-3)
P 		113.4
(2.7)
P 		79.5
(-0.7)
P 		61
B 118.8
(-0.6)
P 		124.2
(-0.2)
P 		84.5
(-3)
P 		92.8
(-2.4)
P 		170.1
(3)
P 		118.5
(-0.6)
P 		86
C 114.9
(2.6)
P 		116.9
(3)
P 		84.2
(-3)
P 		85.4
(-2.8)
P 		113.1
(2.3)
P 		111.9
(2.1)
P 		33
avr 97.3
(-0.9) 		119.3
(1.6) 		80.6
(-2.7) 		78
(-3) 		132.2
(3) 		103.3
(-0.2) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180047_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.592
Sequence Type Exemplar sequence
Representative Public ID Y40B1B.8 NCBI
Target Description Y40B1B.8 /REP_DB=WormBase Gene ID /WP=CE24254 /TR=Q9U2J0 /GB=CAA21607.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060963(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060963 NCBI Caenorhabditis elegans Y40B1B.8 (Y40B1B.8) mRNA, complete cds. 11/11 None
GENEFINDER00000004556 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13437039:13442497:1 11/11 None
Y40B1B.8.2 ENSEMBL cdna:known chromosome:CEL140:I:13437032:13442852:1 gene:Y40B1B.8 11/11 None
Y40B1B.8.1 ENSEMBL cdna:known chromosome:CEL140:I:13437032:13442721:1 gene:Y40B1B.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004545 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13436969-13442428(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y40B1B.8
Entrez Gene 173212 Entrez gene
SwissProt Q9U2J0 EMBL-EBI
WormBase CE24254 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605499_AT similar to CG8931-PA cfa
CANINE_2:CFA.2658.1.S1_AT similar to CG8931-PA cfa
CANINE_2:CFAAFFX.11964.1.S1_S_AT similar to CG8931-PA cfa
DROSOPHILA_2:1629592_AT dm
DROSGENOME1:152635_AT dm
CHICKEN:GGAAFFX.12924.1.S1_AT similar to hypothetical protein BC017169 gga
CHICKEN:GGAAFFX.153.1.S1_S_AT similar to hypothetical protein BC017169 gga
HUGENEFL:M74089_AT hypothetical protein BC017169 hs
U133_X3P:HS.75639.0.S1_3P_AT hypothetical protein BC017169 hs
HG-U133A_2:212833_AT hypothetical protein BC017169 hs
HG-U133_PLUS_2:212833_AT hypothetical protein BC017169 hs
HG-U133A:212833_AT hypothetical protein BC017169 hs
HG-U95AV2:37178_AT hypothetical protein BC017169 hs
HG-U95E:76060_R_AT hypothetical protein BC017169 hs
HG-U95E:88061_AT hypothetical protein BC017169 hs
HG-U133_PLUS_2:226831_AT Hypothetical protein BC017169 hs
HG-U133B:226831_AT Hypothetical protein BC017169 hs
HG-U95B:50273_AT Hypothetical protein BC017169 hs
HG-U95D:70049_AT Hypothetical protein BC017169 hs
HU35KSUBA:RC_AA449108_AT Hypothetical protein BC017169 hs
MG-U74BV2:116372_AT RIKEN cDNA 1200007B05 gene mm
MG-U74BV2:163749_AT RIKEN cDNA 1200007B05 gene mm
MG-U74BV2:162602_AT RIKEN cDNA 1200007B05 gene mm
MOE430A:1418134_AT RIKEN cDNA 1200007B05 gene mm
MOUSE430A_2:1418134_AT RIKEN cDNA 1200007B05 gene mm
MOUSE430_2:1418134_AT RIKEN cDNA 1200007B05 gene mm
MOE430A:1448970_AT RIKEN cDNA 1200007B05 gene mm
MOUSE430A_2:1448970_AT RIKEN cDNA 1200007B05 gene mm
MOUSE430_2:1448970_AT RIKEN cDNA 1200007B05 gene mm
MU19KSUBA:TC14755_AT RIKEN cDNA 1200007B05 gene, mRNA (cDNA clone MGC:28937 IMAGE:3990909) mm
MU19KSUBB:TC34895_AT RIKEN cDNA 1200007B05 gene, mRNA (cDNA clone MGC:28937 IMAGE:3990909) mm
RG-U34C:RC_AI180426_AT similar to RIKEN cDNA 1200007B05 gene (predicted) rn
RAE230B:1382150_AT similar to RIKEN cDNA 1200007B05 gene (predicted) rn
RAT230_2:1382150_AT similar to RIKEN cDNA 1200007B05 gene (predicted) rn
RAE230B:1386088_AT similar to RIKEN cDNA 1200007B05 gene (predicted) rn
RAT230_2:1386088_AT similar to RIKEN cDNA 1200007B05 gene (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21607 Hypothetical protein Y40B1B.8 [Caenorhabditis elegans] ref|NP_493364.1| Y40B1B.8 [Caenorhabditis elegans] 0.0
blast CAE63533 Hypothetical protein CBG08013 [Caenorhabditis briggsae] 0.0
blast CAG32480 hypothetical protein [Gallus gallus] ref|NP_001007831.1| hypothetical protein LOC415610 [Gallus gallus] 6.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.1E-5
Sequence
Target Sequence 
>C. ELEGANS:180047_AT
ttgggcactttatgcgggtgtcggcgcagttcttctcgaatattcccttcaccaaggcct
ccaacaactggttcgagcgtgtttcgatcgcggatccgagcttcttcgtaaagcgacaca
aggtcatccagtagtacaatcctcccagattacaccaccaatttccgcaaaatccagctt
caacgggccaatttccaatagtttcccgtcggctggagccgctcttttatcgccaatgag
cacaccgagaaaacattcaacaccgccaaaggaccccacagaattcccgactttcgggga
aactgtgagccaaattgggtcaccttatcagatgcctgataggcctaatgttttcggaag
cccgccgaatagaactcgtgccacacatgattcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGGCACTTTATGCGGGTGTCGGC 110 709 1056 Antisense
GCCTCCAACAACTGGTTCGAGCGTG 270 283 1112 Antisense
TTCGAGCGTGTTTCGATCGCGGATC 266 697 1127 Antisense
GGATCCGAGCTTCTTCGTAAAGCGA 162 513 1147 Antisense
AGGTCATCCAGTAGTACAATCCTCC 613 57 1176 Antisense
TTACACCACCAATTTCCGCAAAATC 257 681 1205 Antisense
GCAAAATCCAGCTTCAACGGGCCAA 244 319 1222 Antisense
AGCCGCTCTTTTATCGCCAATGAGC 341 83 1272 Antisense
AATTGGGTCACCTTATCAGATGCCT 451 179 1368 Antisense
GCCTAATGTTTTCGGAAGCCCGCCG 80 283 1398 Antisense
GAACTCGTGCCACACATGATTCGAC 375 349 1427 Antisense
Sequence Source Affymetrix Proprietary Database