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[180046_at]

Description Y40B1A.3 /REP_DB=WormBase Gene ID /WP=CE21788 /TR=Q9XW27 /GB=CAA22306.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 44      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 73.6
(-1.1)
A 		153
(3)
A 		56.1
(-2)
A 		35.6
(-3)
A 		117
B 89.6
(0.1)
A 		127.9
(3)
A 		47.7
(-3)
A 		99.1
(0.8)
A 		80
C 120.6
(3)
A 		47.2
(-3)
A 		81
(-0.2)
A 		85
(0.1)
A 		73
avr 94.6
(1.1) 		109.4
(3) 		61.6
(-3) 		73.2
(-1.5) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 93.8
(3)
A 		58.1
(-0.8)
A 		84.9
(2.1)
A 		85
(2.1)
A 		37.4
(-3)
A 		46.2
(-2.1)
A 		56
B 9.6
(-3)
A 		81.4
(3)
A 		24.1
(-1.8)
A 		74.4
(2.4)
A 		44.7
(-0.1)
A 		54.6
(0.8)
A 		72
C 20.6
(-3)
A 		21.6
(-2.8)
A 		24.9
(-2.2)
A 		41.8
(1)
A 		52.4
(3)
A 		32.8
(-0.7)
A 		32
avr 41.3
(-3) 		53.7
(-0.1) 		44.6
(-2.2) 		67.1
(3) 		44.8
(-2.2) 		44.5
(-2.3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 26.8
(1.6)
A 		33.2
(3)
A 		14.7
(-1)
A 		5.2
(-3)
A 		28
B 28.6
(2.1)
A 		31.6
(3)
A 		11.1
(-3)
A 		21.1
(-0.1)
A 		21
C 39.9
(3)
A 		13.6
(-3)
A 		28.2
(0.3)
A 		14.3
(-2.8)
A 		26
avr 31.8
(3) 		26.1
(1.1) 		18
(-1.5) 		13.5
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 17.3
(0.5)
A 		20.7
(2.5)
A 		18.5
(1.2)
A 		21.6
(3)
A 		11.3
(-2.9)
A 		11.2
(-3)
A 		10
B 3.3
(-3)
A 		27.1
(3)
A 		5.9
(-2.3)
A 		19.7
(1.1)
A 		18.2
(0.8)
A 		20.4
(1.3)
A 		24
C 7.6
(-2.3)
A 		6.6
(-2.8)
A 		6.3
(-3)
A 		8.4
(-1.8)
A 		17
(3)
A 		11
(-0.4)
A 		11
avr 9.4
(-3) 		18.1
(3) 		10.2
(-2.4) 		16.6
(2) 		15.5
(1.2) 		14.2
(0.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180046_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.591
Sequence Type Exemplar sequence
Representative Public ID Y40B1A.3 NCBI
Target Description Y40B1A.3 /REP_DB=WormBase Gene ID /WP=CE21788 /TR=Q9XW27 /GB=CAA22306.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060951(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060951 NCBI Caenorhabditis elegans Y40B1A.3 (Y40B1A.3) mRNA, complete cds. 10/11 None
Y40B1A.3 ENSEMBL cdna:known chromosome:CEL140:I:13363783:13366526:1 gene:Y40B1A.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031120 8/11 Cross Hyb Matching Probes None
GENEFINDER00000031125 8/11 Cross Hyb Matching Probes None
GENEFINDER00000031123 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13363713-13366457(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y40B1A.3
Entrez Gene 189782 Entrez gene
SwissProt Q9XW27 EMBL-EBI
WormBase CE34508 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22306 Hypothetical protein Y40B1A.3 [Caenorhabditis elegans] ref|NP_493352.2| Y40B1A.3 [Caenorhabditis elegans] 1.0E-125
blast CAE73015 Hypothetical protein CBG20373 [Caenorhabditis briggsae] 8.0E-36
Sequence
Target Sequence 
>C. ELEGANS:180046_AT
taagggctaccgacctcaaggagcaagtccgccgaaagagttgaaacgaaggttttatga
tgatggaagtgttacaccatcatctagacaatcaagaaatgaacgaagtatggatggaag
accctcaccagagcatggaggtactgaaacaataatcggagaaaatcgaaaatcatcgcc
accagccgaagaaaaatattcaaattctggaacaagatgtaaacttccgattcctgatat
gtttagattttatgataaagaaatggctaatgagaagcttgaatcattgggattagctga
tgaagatgataaaaagactttgacaaaaatgcgtcgtcactcgatttggatggacaatca
attgttgaatcaacttcaagcatctgaatccaataaacaatatttaagtgcaaagaaaca
aatgagagatattcttattacgagaattgatcatattgataacgctcacaagaacgtaaa
ttcgctatttgtacatgattttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGGGCTACCGACCTCAAGGAGCA 134 637 138 Antisense
CCTCAAGGAGCAAGTCCGCCGAAAG 76 269 151 Antisense
GAAGTGTTACACCATCATCTAGACA 674 335 203 Antisense
GTATGGATGGAAGACCCTCACCAGA 686 453 245 Antisense
GACCCTCACCAGAGCATGGAGGTAC 454 381 257 Antisense
AAATCGAAAATCATCGCCACCAGCC 375 119 300 Antisense
ATCATCGCCACCAGCCGAAGAAAAA 488 29 309 Antisense
GATGTAAACTTCCGATTCCTGATAT 359 409 353 Antisense
AAATGCGTCGTCACTCGATTTGGAT 579 119 464 Antisense
GATCATATTGATAACGCTCACAAGA 101 421 586 Antisense
ATTCGCTATTTGTACATGATTTTGT 367 9 617 Antisense
Sequence Source Affymetrix Proprietary Database