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[180045_at]

Description F08C6.5 /REP_DB=WormBase Gene ID /WP=CE02594 /TR=Q19199 /GB=AAA68724.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 70      4grp_high_8_8 > 21      6grp_highest_nonorm > 90      6grp_total > 90      4grp_total > 10      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 47.3
(-3)
P 		48.5
(-3)
A 		71.9
(-2.1)
P 		210.2
(3)
P 		163
B 74.5
(-1)
P 		93.1
(1.1)
P 		55.9
(-3)
M 		110.4
(3)
P 		55
C 54.2
(-2.4)
P 		60.4
(-2.1)
A 		43.7
(-3)
P 		153.1
(3)
P 		109
avr 58.7
(-2.9) 		67.3
(-2.4) 		57.2
(-3) 		157.9
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 114.7
(3)
P 		85.2
(-1)
P 		70.7
(-3)
P 		85.2
(-1)
P 		79.4
(-1.8)
P 		79.1
(-1.9)
P 		44
B 66.2
(-1.1)
P 		66.3
(-1.1)
P 		66.6
(-1.1)
P 		96.6
(3)
P 		81.4
(0.9)
P 		52.5
(-3)
P 		44
C 51.5
(-1.9)
P 		70.2
(0.4)
P 		69.3
(0.3)
P 		91.3
(3)
P 		61.4
(-0.6)
P 		42.1
(-3)
P 		49
avr 77.5
(0.6) 		73.9
(-0.1) 		68.9
(-1) 		91
(3) 		74.1
(-0.1) 		57.9
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 17.2
(-1)
P 		10.5
(-3)
A 		18.8
(-0.5)
P 		30.8
(3)
P 		20
B 23.7
(3)
P 		23
(2.6)
P 		13
(-3)
M 		23.5
(2.9)
P 		11
C 17.9
(-1.5)
P 		17.4
(-1.8)
A 		15.2
(-3)
P 		25.8
(3)
P 		11
avr 19.6
(-0.9) 		17
(-2.3) 		15.7
(-3) 		26.7
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 21.1
(-0.7)
P 		30.3
(3)
P 		15.4
(-3)
P 		21.6
(-0.5)
P 		24
(0.5)
P 		19.3
(-1.4)
P 		15
B 23
(-0.6)
P 		22.1
(-0.9)
P 		16.2
(-3)
P 		25.6
(0.3)
P 		33.1
(3)
P 		19.6
(-1.8)
P 		17
C 19.1
(1.1)
P 		21.4
(3)
P 		17.6
(-0.1)
P 		18.4
(0.5)
P 		19.9
(1.8)
P 		14.1
(-3)
P 		7
avr 21.1
(0) 		24.6
(2.3) 		16.4
(-3) 		21.9
(0.5) 		25.7
(3) 		17.7
(-2.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180045_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16405
Sequence Type Exemplar sequence
Representative Public ID F08C6.5 NCBI
Target Description F08C6.5 /REP_DB=WormBase Gene ID /WP=CE02594 /TR=Q19199 /GB=AAA68724.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076879(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076879 NCBI Caenorhabditis elegans F08C6.5 (F08C6.5) mRNA, complete cds. 11/11 None
GENEFINDER00000044583 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7560073:7562660:1 11/11 None
F08C6.5 ENSEMBL cdna:known chromosome:CEL140:X:7560073:7561751:1 gene:F08C6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044575 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7560071-7561750(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08C6.5
Entrez Gene 184175 Entrez gene
SwissProt Q19199 EMBL-EBI
WormBase CE02594 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68724 Hypothetical protein F08C6.5 [Caenorhabditis elegans] ref|NP_509280.1| F08C6.5 [Caenorhabditis elegans] 7.0E-83
blast AAA68724 Hypothetical protein F08C6.5 [Caenorhabditis elegans] ref|NP_509280.1| F08C6.5 [Caenorhabditis elegans] 1.0E-78
blast CAE70239 Hypothetical protein CBG16728 [Caenorhabditis briggsae] 3.0E-52
blast CAE70239 Hypothetical protein CBG16728 [Caenorhabditis briggsae] 1.0E-51
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509280.1 3 40-59,66-88,98-120
F08C6.5 3 40-59,66-88,98-120
GENEFINDER00000044583 3 40-59,66-88,98-120
Sequence
Target Sequence 
>C. ELEGANS:180045_AT
gcggttgcggtggtttacacctgcattattatttcaaatttatgtatgagagtaatcaaa
tccgaggaagtgaaatggtcttggcaagtattgtttttggccagtgattccatagcggtt
atcagtttattctacgggataacgaggcaacatgcggcttttttgcaaccattcactgtt
ctcagtattctgaccgtatcattttgcctgctgctttctttcttctatctctcagcagtg
attgacccaagttcttacgcagctgagcagatcgaaattgttcttgccgataaggtgcag
tattttgctgatcttctgaacacgaccccaaaagcaggtacgcacgcgctttttatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGTTGCGGTGGTTTACACCTGCA 308 291 133 Antisense
GGCCAGTGATTCCATAGCGGTTATC 567 543 231 Antisense
AGCGGTTATCAGTTTATTCTACGGG 581 81 246 Antisense
GGCAACATGCGGCTTTTTTGCAACC 397 533 278 Antisense
TTGCAACCATTCACTGTTCTCAGTA 353 703 295 Antisense
GTATTCTGACCGTATCATTTTGCCT 403 453 317 Antisense
CTTTCTTCTATCTCTCAGCAGTGAT 520 223 350 Antisense
CCCAAGTTCTTACGCAGCTGAGCAG 527 257 378 Antisense
TTTGCTGATCTTCTGAACACGACCC 200 667 436 Antisense
GAACACGACCCCAAAAGCAGGTACG 420 349 450 Antisense
AGCAGGTACGCACGCGCTTTTTATT 28 79 465 Antisense
Sequence Source Affymetrix Proprietary Database