[Home] | [Total List]

[180042_at]

Description C34C12.2 /REP_DB=WormBase Gene ID /WP=CE03056 /TR=Q09495 /GB=CAA87102.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 87      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 93      6grp_total > 77      4grp_total > 15      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 390.9
(1.4)
P 		225.7
(-3)
P 		264.1
(-2)
P 		450.7
(3)
P 		225
B 410.2
(3)
P 		236.3
(-3)
P 		258.9
(-2.2)
P 		352.9
(1)
P 		174
C 374.4
(3)
P 		221.9
(-3)
P 		266.1
(-1.3)
P 		369
(2.8)
P 		153
avr 391.8
(3) 		228
(-3) 		263
(-1.7) 		390.9
(3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 348
1 2 3 4 5 6 range
A 293.7
(-2.7)
P 		385
(-1)
P 		277
(-3)
P 		358.6
(-1.5)
P 		378.2
(-1.1)
P 		599.4
(3)
P 		322
B 282.7
(-2.4)
P 		298.1
(-2.1)
P 		251.1
(-3)
P 		394.8
(-0.2)
P 		398.3
(-0.1)
P 		555.5
(3)
P 		304
C 293.2
(-2.9)
P 		288.9
(-3)
P 		393
(-0.9)
P 		360.8
(-1.6)
P 		391.1
(-1)
P 		589.6
(3)
P 		301
avr 289.9
(-3) 		324
(-2.3) 		307
(-2.6) 		371.4
(-1.3) 		389.2
(-1) 		581.5
(3) 		292
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 142.3
(3)
P 		49
(-3)
P 		69
(-1.7)
P 		66
(-1.9)
P 		93
B 130.8
(3)
P 		58.3
(-3)
P 		60
(-2.9)
P 		75.2
(-1.6)
P 		73
C 123.9
(3)
P 		63.8
(-2.8)
P 		92.7
(-0)
P 		62.2
(-3)
P 		62
avr 132.3
(3) 		57
(-3) 		73.9
(-1.7) 		67.8
(-2.1) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 54.1
(-3)
P 		136.9
(2.4)
P 		60.3
(-2.6)
P 		90.9
(-0.6)
P 		114.1
(0.9)
P 		145.9
(3)
P 		92
B 98.4
(-1.5)
P 		99.2
(-1.4)
P 		61
(-3)
P 		104.6
(-1.2)
P 		161.8
(1.1)
P 		207.1
(3)
P 		146
C 108.7
(-1.3)
P 		88.2
(-2.3)
P 		100
(-1.7)
P 		72.6
(-3)
P 		126.5
(-0.4)
P 		197.4
(3)
P 		125
avr 87.1
(-2.3) 		108.1
(-1.1) 		73.8
(-3) 		89.4
(-2.1) 		134.1
(0.3) 		183.5
(3) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180042_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6127
Sequence Type Exemplar sequence
Representative Public ID C34C12.2 NCBI
Target Description C34C12.2 /REP_DB=WormBase Gene ID /WP=CE03056 /TR=Q09495 /GB=CAA87102.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065311(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065311 NCBI Caenorhabditis elegans C34C12.2 (C34C12.2) mRNA, complete cds. 11/11 None
SNAP00000028569 ENSEMBL cdna:SNAP chromosome:CEL140:III:3454330:3460030:1 11/11 None
GENEFINDER00000028579 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3454348:3460030:1 11/11 None
C34C12.2 ENSEMBL cdna:known chromosome:CEL140:III:3456462:3460065:1 gene:C34C12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3456584-3460030(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34C12.2
Entrez Gene 175448 Entrez gene
SwissProt Q09495 EMBL-EBI
WormBase CE03056 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87102 Hypothetical protein C34C12.2 [Caenorhabditis elegans] ref|NP_497712.1| C34C12.2 [Caenorhabditis elegans] 0.0
blast CAA87099 Hypothetical protein C34C12.1 [Caenorhabditis elegans] ref|NP_497711.1| C34C12.1 [Caenorhabditis elegans] 0.0
blast CAA21736 Hypothetical protein Y47H9C.9 [Caenorhabditis elegans] ref|NP_493018.1| Y47H9C.9 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 3.20000004768372
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 3.09999990463257
scop a.4.5.C-terminal fragment of elongation factor SelB All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; C-terminal fragment of elongation factor SelB 3.09999990463257
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 5.2E-124
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 5.2E-124
Sequence
Target Sequence 
>C. ELEGANS:180042_AT
cgccttacaaatctcacgtggtggtggaatcggacgaaatgaatagttcttcgagtacaa
ttggaggatttgagtcagaaaagaaagataatggagctctcggaagccagaaatctccta
tgcccgacattgccacagcacttcacaatatatttgattcaaaagaagttcaaagtagtt
cttcaaccaccggaagctctgcaccgcccgaaaattcgaagaaatcagatcattttgaca
tgccggatatctcctcaactctttacagatctcgtgttgagccaatcagcagctcttcca
gtggatctaccagcacaagtgctccgagatatgtgccaaaaccaatagcccagccagctc
gatatgcaattccaagtccgggtgctttgaatgccttaagacgtcccccagaatggaaag
gtcagcgccgacatgcgccgagttacgtgaaatccagagaaagcgtcacgttcagaggat
gctccagatttccagtcacatcaccgcatttcgcgaaagctcacctggaacctgtgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCTTACAAATCTCACGTGGTGGT 316 253 1427 Antisense
GGAAGCCAGAAATCTCCTATGCCCG 501 525 1528 Antisense
TCTCCTCAACTCTTTACAGATCTCG 229 611 1676 Antisense
ATCAGCAGCTCTTCCAGTGGATCTA 316 29 1711 Antisense
GCCAGCTCGATATGCAATTCCAAGT 426 279 1779 Antisense
AGTCCGGGTGCTTTGAATGCCTTAA 293 61 1801 Antisense
GGAAAGGTCAGCGCCGACATGCGCC 609 527 1841 Antisense
GCGTCACGTTCAGAGGATGCTCCAG 675 291 1889 Antisense
GATGCTCCAGATTTCCAGTCACATC 89 415 1904 Antisense
ATCACCGCATTTCGCGAAAGCTCAC 341 29 1926 Antisense
GAAAGCTCACCTGGAACCTGTGACT 654 357 1941 Antisense
Sequence Source Affymetrix Proprietary Database