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[180040_s_at]

Description C18B2.5 /REP_DB=WormBase Gene ID /WP=CE04044 /TR=Q18076 /GB=AAK39176.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 26      4grp_high_8_8 > 58      6grp_highest_nonorm > 02      6grp_total > 05      4grp_total > 61      6grp_highest_sub > De      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1501
1 2 3 4 range
A 4094.8
(2.1)
P 		3052.7
(-2.1)
P 		4302.1
(3)
P 		2840.4
(-3)
P 		1462
B 4055.9
(3)
P 		3737.5
(0.8)
P 		3976.9
(2.4)
P 		3201.4
(-3)
P 		855
C 3861
(2.4)
P 		3754.5
(1.8)
P 		3989.1
(3)
P 		2801.2
(-3)
P 		1188
avr 4003.9
(2.6) 		3514.9
(-0) 		4089.4
(3) 		2947.7
(-3) 		1142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1873
1 2 3 4 5 6 range
A 3122.8
(3)
P 		3061.9
(2.7)
P 		1998
(-2.3)
P 		1840.6
(-3)
P 		2077.8
(-1.9)
P 		1883.2
(-2.8)
P 		1282
B 3271.2
(3)
P 		2721.9
(1.1)
P 		2248.1
(-0.6)
P 		2062.5
(-1.3)
P 		1826.8
(-2.1)
P 		1569.3
(-3)
P 		1702
C 3300
(3)
P 		2593.1
(0.7)
P 		2590.9
(0.7)
P 		1884.7
(-1.5)
P 		2213.6
(-0.5)
P 		1427
(-3)
P 		1873
avr 3231.3
(3) 		2792.3
(1.4) 		2279
(-0.6) 		1929.3
(-1.9) 		2039.4
(-1.5) 		1626.5
(-3) 		1605
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1075
1 2 3 4 range
A 1490.9
(3)
P 		662.6
(-1.6)
P 		1124.6
(1)
P 		415.8
(-3)
P 		1075
B 1293.4
(3)
P 		923.1
(-0.6)
P 		921.5
(-0.7)
P 		682.2
(-3)
P 		611
C 1278.1
(2.3)
P 		1079.4
(1)
P 		1390.3
(3)
P 		472.3
(-3)
P 		918
avr 1354.1
(3) 		888.4
(-0.4) 		1145.5
(1.5) 		523.4
(-3) 		831

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 844
1 2 3 4 5 6 range
A 575.7
(-1.7)
P 		1089
(3)
P 		435.1
(-3)
P 		466.8
(-2.7)
P 		627
(-1.2)
P 		458.5
(-2.8)
P 		654
B 1138.2
(3)
P 		906
(0.6)
P 		545.9
(-3)
P 		546.3
(-3)
P 		742.2
(-1)
P 		585.2
(-2.6)
P 		592
C 1223.2
(3)
P 		791.2
(-0.1)
P 		659.4
(-1)
P 		379
(-3)
P 		716.3
(-0.6)
P 		477.7
(-2.3)
P 		844
avr 979
(3) 		928.7
(2.4) 		546.8
(-2) 		464
(-3) 		695.2
(-0.3) 		507.1
(-2.5) 		515
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180040_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18543
Sequence Type Exemplar sequence
Representative Public ID C18B2.5 NCBI
Target Description C18B2.5 /REP_DB=WormBase Gene ID /WP=CE04044 /TR=Q18076 /GB=AAK39176.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171945(11), NM_171653(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171945 NCBI Caenorhabditis elegans C18B2.5b (C18B2.5) mRNA, complete cds. 11/11 None
NM_171653 NCBI Caenorhabditis elegans C18B2.5a (C18B2.5) mRNA, complete cds. 11/11 None
GENEFINDER00000016057 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3604497:3611077:-1 11/11 None
SNAP00000016049 ENSEMBL cdna:SNAP chromosome:CEL140:X:3606866:3611077:-1 11/11 None
C18B2.5b ENSEMBL cdna:known chromosome:CEL140:X:3606727:3611079:-1 gene:C18B2.5 11/11 None
C18B2.5a.2 ENSEMBL cdna:known chromosome:CEL140:X:3606866:3611081:-1 gene:C18B2.5 11/11 None
C18B2.5a.1 ENSEMBL cdna:known chromosome:CEL140:X:3606866:3611079:-1 gene:C18B2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3606866-3611078(-) 99.7 100.0
Public Domain and Genome References
Ensembl C18B2.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM51516 Hypothetical protein C18B2.5b [Caenorhabditis elegans] ref|NP_741751.1| C18B2.5b [Caenorhabditis elegans] 0.0
blast AAK39176 Hypothetical protein C18B2.5a [Caenorhabditis elegans] ref|NP_741750.1| C18B2.5a [Caenorhabditis elegans] 0.0
blast CAE68453 Hypothetical protein CBG14243 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004182 EMBL-EBI GRAM domain 1.4E-13
Sequence
Target Sequence 
>C. ELEGANS:180040_S_AT
tgtgaacgcaaccactggactcaccgcctacgttttcaacaacactgttcttccttataa
cgtcactgttgttgacacacccggggttgaggacaaaatgggcaacaagacggtctcgcg
acttatcaagcagtggtttgagaaggagcttctcaaatctggatccttccgtcttgatgc
aatctcaattgttttgagacacgacgagaatcaactgggatggccgttcatttatgagtt
ggctgatgttaagagaatgttcggagacgatttgaaaacaaacgttctgccgattatcac
caactctgaagttctcccacagccaattgccatcaaaagtctcacacaggccaacatttc
tttccttgaatactacaaagttaacaactcgggattcgcaccactcccaacaggaatttc
caaacttcaacataatctctactggacacacggaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGAACGCAACCACTGGACTCACC 200 557 1452 Antisense
CACTGTTCTTCCTTATAACGTCACT 658 197 1494 Antisense
AACGTCACTGTTGTTGACACACCCG 171 145 1510 Antisense
ACGGTCTCGCGACTTATCAAGCAGT 278 95 1561 Antisense
TCAAATCTGGATCCTTCCGTCTTGA 373 629 1604 Antisense
GAATCAACTGGGATGGCCGTTCATT 459 325 1659 Antisense
AACAAACGTTCTGCCGATTATCACC 422 135 1728 Antisense
TATCACCAACTCTGAAGTTCTCCCA 230 659 1746 Antisense
CACAGGCCAACATTTCTTTCCTTGA 529 195 1796 Antisense
TTAACAACTCGGGATTCGCACCACT 42 683 1832 Antisense
TAATCTCTACTGGACACACGGAACA 487 635 1884 Antisense
Sequence Source Affymetrix Proprietary Database