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[180038_s_at]

Description B0041.5 /REP_DB=WormBase Gene ID /WP=CE07670 /TR=O02057 /GB=AAC24254.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 93      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 65      6grp_total > 84      4grp_total > 07      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 1071.1
(2.7)
P 		1004.1
(-3)
P 		1075.2
(3)
P 		1009.1
(-2.6)
P 		71
B 1111.2
(1)
P 		1015.5
(-3)
P 		1103.2
(0.7)
P 		1158.6
(3)
P 		143
C 1135.7
(1.5)
P 		970.2
(-3)
P 		982
(-2.7)
P 		1189.9
(3)
P 		220
avr 1106
(2.4) 		996.6
(-3) 		1053.5
(-0.2) 		1119.2
(3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 736
1 2 3 4 5 6 range
A 950.7
(-3)
P 		993.3
(-2.5)
P 		959.7
(-2.9)
P 		1421.5
(2.3)
P 		1483.7
(3)
P 		1277.9
(0.7)
P 		533
B 900.5
(-1.7)
P 		778.6
(-3)
P 		1243
(1.9)
P 		1335.5
(2.9)
P 		1342
(3)
P 		1148.9
(0.9)
P 		563
C 747.3
(-3)
P 		809.3
(-2.5)
P 		1152.3
(0.5)
P 		1448.6
(3)
P 		1218.7
(1)
P 		1220.1
(1)
P 		701
avr 866.2
(-2.9) 		860.4
(-3) 		1118.3
(-0.1) 		1401.9
(3) 		1348.1
(2.4) 		1215.6
(0.9) 		542
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 242
1 2 3 4 range
A 390
(3)
P 		218
(-1.3)
P 		281.1
(0.3)
P 		147.7
(-3)
P 		242
B 354.3
(3)
P 		250.8
(-2.8)
P 		255.6
(-2.5)
P 		246.9
(-3)
P 		107
C 375.9
(3)
P 		278.9
(-0.3)
P 		342.3
(1.8)
P 		200.6
(-3)
P 		175
avr 373.4
(3) 		249.2
(-1.3) 		293
(0.2) 		198.4
(-3) 		175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 370
1 2 3 4 5 6 range
A 175.3
(-3)
P 		353.3
(0.9)
P 		209
(-2.3)
P 		360.5
(1.1)
P 		447.7
(3)
P 		311.1
(-0)
P 		272
B 313.3
(-1.9)
P 		259.2
(-3)
P 		301.8
(-2.1)
P 		353.7
(-1)
P 		545.2
(3)
P 		428.4
(0.5)
P 		286
C 277
(-1.9)
P 		246.9
(-3)
P 		293.3
(-1.3)
P 		291.3
(-1.4)
P 		394.3
(2.5)
P 		408.4
(3)
P 		162
avr 255.2
(-3) 		286.5
(-2.1) 		268
(-2.6) 		335.2
(-0.7) 		462.4
(3) 		382.6
(0.7) 		207
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180038_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1812
Sequence Type Exemplar sequence
Representative Public ID B0041.5 NCBI
Target Description B0041.5 /REP_DB=WormBase Gene ID /WP=CE07670 /TR=O02057 /GB=AAC24254.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059017(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059017 NCBI Caenorhabditis elegans B0041.5 (B0041.5) mRNA, complete cds. 11/11 None
SNAP00000016533 ENSEMBL cdna:SNAP chromosome:CEL140:I:4648441:4650703:-1 11/11 None
GENEFINDER00000016541 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4648441:4650703:-1 11/11 None
B0041.5 ENSEMBL cdna:known chromosome:CEL140:I:4648286:4650771:-1 gene:B0041.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4648440-4650703(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0041.5
Entrez Gene 172075 Entrez gene
SwissProt O02057 EMBL-EBI
WormBase CE29527 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258831_AT membrane protein at
CANINE_2:CFA.21021.1.S1_S_AT similar to solute carrier family 35, member F5 cfa
CANINE_2:CFAAFFX.8407.1.S1_S_AT similar to solute carrier family 35, member F5 cfa
DROSOPHILA_2:1638782_AT dm
DROSGENOME1:153053_AT dm
CHICKEN:GGA.12099.1.S1_S_AT similar to solute carrier family 35, member F5 gga
CHICKEN:GGAAFFX.23800.1.S1_AT similar to solute carrier family 35, member F5 gga
HG-U133_PLUS_2:220123_AT solute carrier family 35, member F5 hs
HG-U133A:220123_AT solute carrier family 35, member F5 hs
HG-U133A_2:220123_AT solute carrier family 35, member F5 hs
HU35KSUBA:RC_AA423854_AT solute carrier family 35, member F5 hs
HU35KSUBD:RC_H98233_S_AT solute carrier family 35, member F5 hs
HU35KSUBD:RC_H97681_AT solute carrier family 35, member F5 hs
HU35KSUBD:RC_AA465381_AT solute carrier family 35, member F5 hs
U133_X3P:G13376773_3P_AT solute carrier family 35, member F5 hs
U133_X3P:HS.108812.1.S1_3P_AT solute carrier family 35, member F5 hs
HG-U133_PLUS_2:225872_AT solute carrier family 35, member F5 hs
HG-U133B:225872_AT solute carrier family 35, member F5 hs
HG-U95B:42304_AT solute carrier family 35, member F5 hs
HG-U95C:63348_AT solute carrier family 35, member F5 hs
HG-U95D:81624_AT solute carrier family 35, member F5 hs
HG-U95B:47658_AT Solute carrier family 35, member F5 hs
HG-U95C:59764_AT Solute carrier family 35, member F5 hs
HU35KSUBC:RC_N25427_AT Solute carrier family 35, member F5 hs
HU35KSUBC:RC_N26772_AT Solute carrier family 35, member F5 hs
MG-U74BV2:108568_AT solute carrier family 35, member F5 mm
MOE430A:1452059_AT solute carrier family 35, member F5 mm
MOUSE430A_2:1452059_AT solute carrier family 35, member F5 mm
MOUSE430_2:1452059_AT solute carrier family 35, member F5 mm
MU19KSUBC:TC41410_AT Solute carrier family 35, member F5 (Slc35f5), mRNA mm
RG-U34B:RC_AI009820_AT solute carrier family 35, member F5 (predicted) rn
RAE230A:1388732_AT solute carrier family 35, member F5 (predicted) rn
RAT230_2:1388732_AT solute carrier family 35, member F5 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAC24254 Hypothetical protein B0041.5 [Caenorhabditis elegans] ref|NP_491418.1| B0041.5 [Caenorhabditis elegans] 0.0
blast CAE74482 Hypothetical protein CBG22233 [Caenorhabditis briggsae] 1.0E-175
blast EAL26295 GA20887-PA [Drosophila pseudoobscura] 6.0E-35
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491418.1 10 17-39,49-69,171-193,198-217,224-246,250-269,281-303,318-340,347-364,374-393
B0041.5 10 17-39,49-69,171-193,198-217,224-246,250-269,281-303,318-340,347-364,374-393
SNAP00000016533 10 17-39,49-69,171-193,198-217,224-246,250-269,281-303,318-340,347-364,374-393
GENEFINDER00000016541 10 17-39,49-69,171-193,198-217,224-246,250-269,281-303,318-340,347-364,374-393
Sequence
Target Sequence 
>C. ELEGANS:180038_S_AT
ataagtgtctcctagtggccatcaacattgccggtgttcttatcgtttctcattatattc
catcatttcttggagcactttttgctcagatgtctgctcttgcttatgcagtttatcttt
ttgcatttggccattttgaggaaaaatatggaaaactggatattaatttgatgtttggag
caatcggagtcatcgctttggttcttggaacacctacattaaatttgttggatagatttg
gtgtagaaccattacatccacttccaaatgctacacagttctcgtcaattttattttctg
cgctcattggaacaattgtcgctgattacctttggcttcttgccgctggaatgtgtgatt
ctctcaccacctgcctatcaatgactgtaagcattcctctgtcattcctcgccgatacag
tgattcgaagcaaagctccaacactggcacaagttattgcatcgattccgatcctcgtgg
cattcgttggcgctgcatatgcacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAAGTGTCTCCTAGTGGCCATCAA 482 25 728 Antisense
CATTGCCGGTGTTCTTATCGTTTCT 329 217 753 Antisense
ATCGTTTCTCATTATATTCCATCAT 590 35 769 Antisense
CTCAGATGTCTGCTCTTGCTTATGC 220 229 812 Antisense
GCAATCGGAGTCATCGCTTTGGTTC 390 321 907 Antisense
TAGAACCATTACATCCACTTCCAAA 298 651 971 Antisense
AATGCTACACAGTTCTCGTCAATTT 66 167 994 Antisense
ATTGTCGCTGATTACCTTTGGCTTC 341 3 1042 Antisense
ACCACCTGCCTATCAATGACTGTAA 574 85 1093 Antisense
GACTGTAAGCATTCCTCTGTCATTC 436 375 1110 Antisense
ATTCGTTGGCGCTGCATATGCACAA 530 9 1209 Antisense
Sequence Source Affymetrix Proprietary Database