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[180037_at]

Description W04E12.7 /REP_DB=WormBase Gene ID /WP=CE19002 /TR=Q9XUL0 /GB=CAB04916.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 74      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 90      6grp_total > 64      4grp_total > 09      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 447
1 2 3 4 range
A 45.9
(-3)
P 		126.6
(-1.7)
P 		91.8
(-2.3)
P 		421.5
(3)
P 		376
B 54.2
(-3)
P 		118.6
(-1.9)
P 		108.8
(-2.1)
P 		408.7
(3)
P 		355
C 49.7
(-3)
P 		103.5
(-2.3)
P 		146.5
(-1.7)
P 		492.5
(3)
P 		443
avr 49.9
(-3) 		116.2
(-2) 		115.7
(-2) 		440.9
(3) 		391

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 78.7
(-3)
P 		164.5
(-0.3)
P 		268.1
(3)
P 		264.9
(2.9)
P 		112.2
(-1.9)
P 		192.9
(0.6)
P 		189
B 80.8
(-3)
P 		140
(-0.6)
P 		197.6
(1.8)
P 		226.5
(3)
P 		150.1
(-0.1)
P 		201.7
(2)
P 		146
C 123.7
(-3)
P 		174.2
(-0.6)
P 		248.2
(3)
P 		125.4
(-2.9)
P 		149.6
(-1.8)
P 		204.2
(0.9)
P 		125
avr 94.4
(-3) 		159.6
(-0.3) 		238
(3) 		205.6
(1.6) 		137.3
(-1.2) 		199.6
(1.4) 		144
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 16.7
(-3)
P 		27.5
(-1.6)
P 		24
(-2)
P 		61.7
(3)
P 		45
B 17.3
(-3)
P 		29.3
(-2)
P 		25.2
(-2.3)
P 		87.1
(3)
P 		70
C 16.4
(-3)
P 		29.8
(-1.8)
P 		51
(0.1)
P 		83
(3)
P 		67
avr 16.8
(-3) 		28.9
(-1.8) 		33.4
(-1.4) 		77.3
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 14.5
(-3)
P 		58.5
(2)
P 		58.4
(2)
P 		67.2
(3)
P 		33.9
(-0.8)
P 		47
(0.7)
P 		53
B 28.1
(-3)
P 		46.6
(-0.6)
P 		48
(-0.5)
P 		60
(1.1)
P 		61
(1.2)
P 		75.2
(3)
P 		47
C 45.8
(-0.1)
P 		53.1
(0.9)
P 		63.2
(2.3)
P 		25.2
(-3)
P 		48.4
(0.2)
P 		68.4
(3)
P 		43
avr 29.5
(-3) 		52.7
(1.1) 		56.5
(1.8) 		50.8
(0.8) 		47.8
(0.2) 		63.5
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180037_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13441
Sequence Type Exemplar sequence
Representative Public ID W04E12.7 NCBI
Target Description W04E12.7 /REP_DB=WormBase Gene ID /WP=CE19002 /TR=Q9XUL0 /GB=CAB04916.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075422
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000038175 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19733785:19735520:-1 None
SNAP00000038162 ENSEMBL cdna:SNAP chromosome:CEL140:V:19734202:19735517:-1 None
NM_075422 NCBI Caenorhabditis elegans W04E12.7 (W04E12.7) mRNA, complete cds. None
W04E12.7 ENSEMBL cdna:known chromosome:CEL140:V:19734198:19734787:-1 gene:W04E12.7 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19734197-19734787(-) 95.56 100.0
Public Domain and Genome References
Gene Title
Ensembl W04E12.7
Entrez Gene 189193 Entrez gene
SwissProt Q9XUL0 EMBL-EBI
WormBase CE34102 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04916 Hypothetical protein W04E12.7 [Caenorhabditis elegans] ref|NP_507823.2| W04E12.7 [Caenorhabditis elegans] 8.0E-89
blast CAB04916 Hypothetical protein W04E12.7 [Caenorhabditis elegans] ref|NP_507823.2| W04E12.7 [Caenorhabditis elegans] 4.0E-88
blast CAB04916 Hypothetical protein W04E12.7 [Caenorhabditis elegans] ref|NP_507823.2| W04E12.7 [Caenorhabditis elegans] 9.0E-88
blast CAB04131 Hypothetical protein F16H6.5 [Caenorhabditis elegans] ref|NP_507560.1| F16H6.5 [Caenorhabditis elegans] 7.0E-74
blast CAB04131 Hypothetical protein F16H6.5 [Caenorhabditis elegans] ref|NP_507560.1| F16H6.5 [Caenorhabditis elegans] 8.0E-74
blast CAB04131 Hypothetical protein F16H6.5 [Caenorhabditis elegans] ref|NP_507560.1| F16H6.5 [Caenorhabditis elegans] 1.0E-70
blast CAB04125 Hypothetical protein F16H6.7 [Caenorhabditis elegans] ref|NP_507562.1| F16H6.7 [Caenorhabditis elegans] 1.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 1.4E-119
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 1.4E-119
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 1.4E-119
Sequence
Target Sequence 
>C. ELEGANS:180037_AT
gtgcaacaagtacccgaatttcgaagatgatgatatggagagatatgtgattgaaaattc
ccatgatgttgtgacagtatttgatggaagcccagcagttatagtttttgatgaattggt
gaaggctgatggtgattttccccagatattttctagatttaaaaattttgacattttttc
agtatcaaagtatctcccgtttaaaatggaacaatcatatgaaaaagcggacgaaattgc
ggcaaagatggctacggaagagattcatttcacaattcatctgagctctcactcgcaaaa
aaatgtgctccaaatcttccaatctgcttattctgatggctatacccaacaggataaaga
tggaaaagttccagaagggggtaaagtcaagtgttctgaaactgaaactggtgccagaag
caatgtcaaatgtgaggaagttgccaaggaggtcaatgaacgtatggattcggataagga
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCAACAAGTACCCGAATTTCGAA 134 481 24 Antisense
AAAATTCCCATGATGTTGTGACAGT 505 131 77 Antisense
TTGTGACAGTATTTGATGGAAGCCC 356 699 92 Antisense
GAAGGCTGATGGTGATTTTCCCCAG 418 319 144 Antisense
GGTGATTTTCCCCAGATATTTTCTA 126 501 154 Antisense
TCAGTATCAAAGTATCTCCCGTTTA 96 623 202 Antisense
TGAAAAAGCGGACGAAATTGCGGCA 656 569 243 Antisense
TTGCGGCAAAGATGGCTACGGAAGA 448 701 260 Antisense
GATGGCTACGGAAGAGATTCATTTC 170 407 270 Antisense
TCTGATGGCTATACCCAACAGGATA 683 607 355 Antisense
GAACGTATGGATTCGGATAAGGACA 403 347 481 Antisense
Sequence Source Affymetrix Proprietary Database