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[180036_s_at]

Description C37A2.5 /REP_DB=WormBase Gene ID /WP=CE27748 /TR=O01500 /GB=AAK68236.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 56      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 90      6grp_total > 56      4grp_total > 23      6grp_cgc > 27      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 193
(1.2)
P 		91.1
(-3)
P 		163.6
(-0)
P 		237.8
(3)
P 		147
B 277.1
(3)
P 		119.5
(-1.8)
P 		80.7
(-3)
P 		180.6
(0.1)
P 		196
C 239.5
(3)
P 		140.5
(-1.5)
P 		107.1
(-3)
P 		180.3
(0.3)
P 		132
avr 236.5
(3) 		117
(-3) 		117.1
(-3) 		199.6
(1.1) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 86.3
(-2)
P 		111.9
(0.3)
P 		106.6
(-0.2)
P 		74.6
(-3)
P 		101.9
(-0.6)
P 		143.2
(3)
P 		69
B 90.3
(-1.4)
P 		130.2
(0.8)
P 		60.4
(-3)
P 		101.1
(-0.8)
P 		66.1
(-2.7)
P 		171.5
(3)
P 		111
C 98
(-1.5)
P 		200.3
(3)
P 		102
(-1.3)
P 		79.9
(-2.2)
P 		62.5
(-3)
P 		162.4
(1.3)
P 		138
avr 91.5
(-1.9) 		147.5
(2.2) 		89.7
(-2.1) 		85.2
(-2.4) 		76.8
(-3) 		159
(3) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 70.3
(3)
P 		19.8
(-3)
P 		42.8
(-0.3)
P 		34.8
(-1.2)
P 		51
B 88.4
(3)
P 		29.5
(-2.1)
P 		18.7
(-3)
P 		38.5
(-1.3)
P 		70
C 79.3
(3)
P 		40.4
(-1.8)
P 		37.3
(-2.2)
P 		30.4
(-3)
P 		49
avr 79.3
(3) 		29.9
(-3) 		32.9
(-2.6) 		34.6
(-2.4) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 15.9
(-3)
P 		39.8
(3)
P 		23.2
(-1.2)
P 		18.9
(-2.2)
P 		30.8
(0.7)
P 		34.9
(1.8)
P 		24
B 31.4
(-1)
P 		43.3
(0.5)
P 		14.7
(-3)
P 		26.8
(-1.5)
P 		26.9
(-1.5)
P 		64
(3)
P 		49
C 36.3
(-0.3)
P 		61.1
(3)
P 		26
(-1.7)
P 		16.1
(-3)
P 		20.2
(-2.5)
P 		54.4
(2.1)
P 		45
avr 27.9
(-1.6) 		48.1
(2.4) 		21.3
(-2.9) 		20.6
(-3) 		26
(-1.9) 		51.1
(3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180036_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.671
Sequence Type Exemplar sequence
Representative Public ID C37A2.5 NCBI
Target Description C37A2.5 /REP_DB=WormBase Gene ID /WP=CE27748 /TR=O01500 /GB=AAK68236.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025858(11), NM_059539(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025858 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-21) (pqn-21) mRNA, complete cds. 11/11 None
NM_059539 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-21) (pqn-21) mRNA, complete cds. 11/11 A 
SNAP00000014175 ENSEMBL cdna:SNAP chromosome:CEL140:I:6782650:6788040:-1 11/11 None
GENEFINDER00000014185 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6782694:6788040:-1 11/11 None
C37A2.5b ENSEMBL cdna:known chromosome:CEL140:I:6782110:6788040:-1 gene:C37A2.5 11/11 None
C37A2.5a ENSEMBL cdna:known chromosome:CEL140:I:6782110:6788044:-1 gene:C37A2.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6785005-6787969(-) 100.0 100.0
Public Domain and Genome References
Ensembl C37A2.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68236 Prion-like-(q/n-rich)-domain-bearing protein protein 21, isoform a [Caenorhabditis elegans] ref|NP_001021029.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-21) [Caenorhabditis elegans] gb|AAF89696.1| putative MAP-like protein [Caenorhabditis elegans] 0.0
blast AAN84846 Prion-like-(q/n-rich)-domain-bearing protein protein 21, isoform b [Caenorhabditis elegans] ref|NP_491940.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-21) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180036_S_AT
gatacatctggtcttttatgcaatgaagcaataatggataccccaccaggatcccagatg
actcttgaggttactgttatgtaccgaacaaagaattcattagcattccgtgtaaaagga
tgtgatcttattggatttattggtgatggtctacctccaatggcatcttcattgacaaac
aatattgcatcatcaatgggtaacaataacaataaaaagaaaactgcaagtagttctgga
aatgaagaaggaaaagatggacgatcaagctcggcaagctcaaatggtcgtggagctcgt
ggtggttctgtgctgaaagacgggaaaggtgataaacaaaaaggaaaacgaaagaaagaa
gaaacaaatgatgatgatttagaggatgaaaatcaaaataatgaacaatacggatctaag
aaatgcgagctcgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACATCTGGTCTTTTATGCAATG 25 425 844 Antisense
GCAATAATGGATACCCCACCAGGAT 281 317 871 Antisense
AGGATCCCAGATGACTCTTGAGGTT 277 57 891 Antisense
TTGAGGTTACTGTTATGTACCGAAC 240 705 908 Antisense
AATTCATTAGCATTCCGTGTAAAAG 294 175 937 Antisense
TTGGTGATGGTCTACCTCCAATGGC 404 707 983 Antisense
TACCTCCAATGGCATCTTCATTGAC 485 649 995 Antisense
GCTCGGCAAGCTCAAATGGTCGTGG 516 299 1112 Antisense
AAATGGTCGTGGAGCTCGTGGTGGT 605 119 1125 Antisense
GTGGTGGTTCTGTGCTGAAAGACGG 72 489 1142 Antisense
CGGATCTAAGAAATGCGAGCTCGTA 579 239 1254 Antisense
Sequence Source Affymetrix Proprietary Database