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[180035_s_at] --- /// --- /// --- /// --- /// ---

Description F58H7.8 /REP_DB=WormBase Gene ID /WP=CE17936 /TR=O45094 /GB=AAC02595.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 63      6grp_total > 63      4grp_total > 0      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 602
1 2 3 4 range
A 382.6
(-1)
P 		207.5
(-3)
P 		543.1
(0.9)
P 		721.3
(3)
P 		514
B 427.5
(-2.3)
P 		373
(-3)
P 		551.6
(-0.5)
P 		809.8
(3)
P 		437
C 357.9
(-2.6)
P 		333.9
(-3)
P 		571.9
(0.5)
P 		736.4
(3)
P 		403
avr 389.3
(-1.9) 		304.8
(-3) 		555.5
(0.3) 		755.8
(3) 		451

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 809
1 2 3 4 5 6 range
A 328.8
(-3)
P 		399.6
(-2.3)
P 		729.2
(0.8)
P 		958.6
(3)
P 		517.2
(-1.2)
P 		686.6
(0.4)
P 		630
B 221.4
(-3)
P 		467.1
(-0.8)
P 		896
(3)
P 		641.1
(0.7)
P 		525.9
(-0.3)
P 		451.3
(-1)
P 		675
C 333.4
(-3)
P 		392.4
(-2.5)
P 		1030.4
(3)
P 		844.2
(1.4)
P 		523
(-1.4)
P 		690.5
(0.1)
P 		697
avr 294.5
(-3) 		419.7
(-1.7) 		885.2
(3) 		814.6
(2.3) 		522
(-0.7) 		609.5
(0.2) 		591
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 139.3
(2.8)
P 		45
(-3)
P 		142
(3)
P 		105.6
(0.7)
P 		97
B 136.3
(0.3)
P 		92.1
(-3)
P 		127.8
(-0.3)
P 		172.6
(3)
P 		81
C 118.5
(-1.7)
P 		96
(-3)
P 		199.3
(3)
P 		124.2
(-1.4)
P 		103
avr 131.4
(1.1) 		77.7
(-3) 		156.4
(3) 		134.1
(1.3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 60.6
(-3)
P 		142.1
(-0.3)
P 		158.8
(0.2)
P 		243.1
(3)
P 		156.1
(0.1)
P 		167.2
(0.5)
P 		183
B 77
(-3)
P 		155.5
(0.3)
P 		217.6
(3)
P 		169.8
(1)
P 		213.7
(2.8)
P 		168.3
(0.9)
P 		141
C 123.6
(-2.8)
P 		119.7
(-3)
P 		262.2
(3)
P 		169.8
(-0.9)
P 		169.2
(-0.9)
P 		231.1
(1.7)
P 		143
avr 87.1
(-3) 		139.1
(-0.5) 		212.9
(3) 		194.2
(2.1) 		179.7
(1.4) 		188.9
(1.9) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180035_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10542
Sequence Type Exemplar sequence
Representative Public ID F58H7.8 NCBI
Target Description F58H7.8 /REP_DB=WormBase Gene ID /WP=CE17936 /TR=O45094 /GB=AAC02595.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067610(11), NM_067609(11), NM_067608(11), NM_067607(11), NM_067606(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067610 NCBI Caenorhabditis elegans F58H7.8 (F58H7.8) mRNA, complete cds. 11/11 None
NM_067609 NCBI Caenorhabditis elegans C44C8.1 (C44C8.1) mRNA, complete cds. 11/11 A 
NM_067608 NCBI Caenorhabditis elegans C44C8.2 (C44C8.2) mRNA, complete cds. 11/11 A 
NM_067607 NCBI Caenorhabditis elegans C44C8.3 (C44C8.3) mRNA, complete cds. 11/11 A 
NM_067606 NCBI Caenorhabditis elegans C44C8.4 (C44C8.4) mRNA, complete cds. 11/11 A 
SNAP00000021735 ENSEMBL cdna:SNAP chromosome:CEL140:IV:891239:892614:1 11/11 None
SNAP00000021739 ENSEMBL cdna:SNAP chromosome:CEL140:IV:895391:896766:1 11/11 None
SNAP00000021742 ENSEMBL cdna:SNAP chromosome:CEL140:IV:899543:900918:1 11/11 None
SNAP00000021746 ENSEMBL cdna:SNAP chromosome:CEL140:IV:903696:905071:1 11/11 None
GENEFINDER00000021756 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:896958:900918:1 10/11 None
GENEFINDER00000021758 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:901110:905071:1 10/11 None
GENEFINDER00000021759 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:892806:896766:1 10/11 None
GENEFINDER00000021760 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:891239:892614:1 10/11 None
SNAP00000022278 ENSEMBL cdna:SNAP chromosome:CEL140:IV:907848:909223:1 11/11 None
GENEFINDER00000022291 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:906802:909223:1 10/11 None
C44C8.4 ENSEMBL cdna:known chromosome:CEL140:IV:891239:894586:1 gene:C44C8.4 11/11 A 
C44C8.3 ENSEMBL cdna:known chromosome:CEL140:IV:895391:898739:1 gene:C44C8.3 11/11 A 
C44C8.2 ENSEMBL cdna:known chromosome:CEL140:IV:899543:902891:1 gene:C44C8.2 11/11 A 
C44C8.1 ENSEMBL cdna:known chromosome:CEL140:IV:903696:906048:1 gene:C44C8.1 11/11 A 
F58H7.8 ENSEMBL cdna:known chromosome:CEL140:IV:907848:909069:1 gene:F58H7.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:895396-896618(+) 100.0 100.0
chrIV:899548-900770(+) 100.0 100.0
chrIV:907853-909075(+) 100.0 100.0
chrIV:891244-892466(+) 99.8 99.8
chrIV:903701-904923(+) 99.8 99.8
Public Domain and Genome References
Gene Title




Ensembl C44C8.4
C44C8.3
C44C8.2
C44C8.1
F58H7.8
Entrez Gene 183447 Entrez gene
183448 Entrez gene
183449 Entrez gene
183450 Entrez gene
186555 Entrez gene
SwissProt Q9TZ18 EMBL-EBI
Q9TW90 EMBL-EBI
Q9TZ17 EMBL-EBI
O45094 EMBL-EBI
WormBase CE17541 Wormbase
CE17542 Wormbase
CE17542 Wormbase
CE17543 Wormbase
CE17936 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68939 Hypothetical protein C44C8.1 [Caenorhabditis elegans] ref|NP_500010.1| C44C8.1 [Caenorhabditis elegans] 0.0
blast AAC68942 Hypothetical protein C44C8.4 [Caenorhabditis elegans] ref|NP_500007.1| C44C8.4 [Caenorhabditis elegans] 0.0
blast AAC68940 Hypothetical protein C44C8.3 [Caenorhabditis elegans] gb|AAC68941.1| Hypothetical protein C44C8.2 [Caenorhabditis elegans] ref|NP_500008.1| C44C8.3 [Caenorhabditis elegans] ref|NP_500009.1| C44C8.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.2E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.2E-4
Sequence
Target Sequence 
>C. ELEGANS:180035_S_AT
aagctccacgatgcagtaaagtatttggttgagaggttcttaggtgggagaggtatatta
aaagttggcacgctttccattggatctcgagggatactgcggataccgtcaagcttgaac
tttaagattcgtcacttggaattaaaaagtgaggataataataagatctttgagacgatc
aagcagcttcttacaatttcccctctaagctcgatttctctctcccacagctataactta
agggatgaagatccagttgttgaatccactggtattcttatcttccaaagtattgttttc
tttgataatgatatgctcaacaatttgaataagctccgtcacaagcgagttcacttatcg
ttcgaccgttttttcgagctgcaaaatgtcgtgtggctcattgacaactggattgaattc
ggaagaaatgttggcactcactattcacttgacgtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTCCACGATGCAGTAAAGTATT 289 149 499 Antisense
AAAAGTTGGCACGCTTTCCATTGGA 21 133 558 Antisense
CACGCTTTCCATTGGATCTCGAGGG 106 201 567 Antisense
GCGGATACCGTCAAGCTTGAACTTT 289 291 597 Antisense
GAACTTTAAGATTCGTCACTTGGAA 226 343 615 Antisense
TCAAGCAGCTTCTTACAATTTCCCC 55 633 677 Antisense
AATCCACTGGTATTCTTATCTTCCA 613 167 761 Antisense
GTTCGACCGTTTTTTCGAGCTGCAA 241 443 858 Antisense
GTCGTGTGGCTCATTGACAACTGGA 347 473 886 Antisense
GAAATGTTGGCACTCACTATTCACT 521 361 923 Antisense
GGCACTCACTATTCACTTGACGTGG 671 535 931 Antisense
Sequence Source Affymetrix Proprietary Database