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[180033_at]

Description F53G2.5 /REP_DB=WormBase Gene ID /WP=CE10998 /TR=O17243 /GB=AAB71015.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 35      6grp_cgc > 17      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 223.4
(-1)
A 		274.7
(3)
A 		197.1
(-3)
A 		263.2
(2.1)
P 		78
B 186.6
(-2.4)
A 		314.7
(2.4)
A 		169.8
(-3)
A 		331.7
(3)
M 		162
C 218.2
(-1)
A 		360.2
(3)
A 		149.7
(-3)
A 		259.2
(0.1)
P 		211
avr 209.4
(-1.5) 		316.5
(3) 		172.2
(-3) 		284.7
(1.7) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 67.1
(-2.1)
A 		140
(1)
A 		95.1
(-0.9)
A 		46.4
(-3)
A 		67.5
(-2.1)
A 		186.2
(3)
A 		140
B 114.9
(2.6)
A 		119.6
(3)
A 		92.1
(0.7)
A 		48.1
(-3)
A 		79
(-0.4)
A 		118.8
(2.9)
A 		72
C 181.8
(3)
A 		99.7
(-1.5)
A 		150.1
(1.3)
A 		73.1
(-3)
A 		129.1
(0.1)
A 		120.2
(-0.4)
A 		109
avr 121.3
(1.6) 		119.8
(1.5) 		112.4
(1) 		55.9
(-3) 		91.9
(-0.5) 		141.7
(3) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 81.3
(3)
A 		59.6
(-0)
A 		51.5
(-1.2)
A 		38.5
(-3)
P 		43
B 59.5
(0.2)
A 		77.7
(3)
A 		39.3
(-3)
A 		70.7
(1.9)
M 		38
C 72.2
(-0.1)
A 		103.6
(3)
A 		52.2
(-2.1)
A 		43.7
(-3)
P 		60
avr 71
(1.3) 		80.3
(3) 		47.7
(-3) 		51
(-2.4) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 12.4
(-2.9)
A 		49.8
(3)
A 		20.7
(-1.6)
A 		11.8
(-3)
A 		20.4
(-1.6)
A 		45.3
(2.3)
A 		38
B 40
(2.2)
A 		39.8
(2.1)
A 		22.4
(-1.2)
A 		12.7
(-3)
A 		32.1
(0.7)
A 		44.3
(3)
A 		32
C 67.4
(3)
A 		30.4
(-1.2)
A 		38.2
(-0.3)
A 		14.7
(-3)
A 		41.8
(0.1)
A 		40.2
(-0.1)
A 		53
avr 39.9
(2.3) 		40
(2.3) 		27.1
(-0.2) 		13.1
(-3) 		31.4
(0.6) 		43.3
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180033_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5588
Sequence Type Exemplar sequence
Representative Public ID F53G2.5 NCBI
Target Description F53G2.5 /REP_DB=WormBase Gene ID /WP=CE10998 /TR=O17243 /GB=AAB71015.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061877(11), NM_061876(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061877 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-42) (pqn-42) mRNA, complete cds. 11/11 A 
NM_061876 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-42) (pqn-42) mRNA, complete cds. 11/11 A 
SNAP00000030757 ENSEMBL cdna:SNAP chromosome:CEL140:II:2455449:2460803:-1 9/11 None
GENEFINDER00000030759 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2453296:2458973:-1 11/11 None
F53G2.4a ENSEMBL cdna:known chromosome:CEL140:II:2452989:2458982:-1 gene:F53G2.4 11/11 None
F53G2.4b ENSEMBL cdna:known chromosome:CEL140:II:2453053:2460188:-1 gene:F53G2.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2456765-2460187(-) 96.72 100.0
Public Domain and Genome References
Ensembl F53G2.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84804 Prion-like-(q/n-rich)-domain-bearing protein protein 42, isoform a [Caenorhabditis elegans] ref|NP_494278.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-42) [Caenorhabditis elegans] 0.0
blast AAN84805 Prion-like-(q/n-rich)-domain-bearing protein protein 42, isoform b [Caenorhabditis elegans] ref|NP_494277.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-42) [Caenorhabditis elegans] 0.0
blast AAN84805 Prion-like-(q/n-rich)-domain-bearing protein protein 42, isoform b [Caenorhabditis elegans] ref|NP_494277.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-42) [Caenorhabditis elegans] 1.0E-114
blast AAN84804 Prion-like-(q/n-rich)-domain-bearing protein protein 42, isoform a [Caenorhabditis elegans] ref|NP_494278.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-42) [Caenorhabditis elegans] 1.0E-107
Sequence
Target Sequence 
>C. ELEGANS:180033_AT
tcgtctgctttcccaaatctgcaaatcgacagagccggtgagggttggccaaggcttgga
gctcagaatttcgatgcttttgtgcttgatggctgctcccgcgtcacagacacctaccag
tggccacagtccgatgtggtgacgtcaccagacattcagaacgccctgaactctgccacc
tcatcaaaatgcaacaacggaggagcccggtgccagatgacgtcaccggcagcggcctcg
aaaaaacgggtcaacgcatggctgaaagagcagcaggaggcggccgccgagcagcagaga
agagcccaaactcagatgccacgtcatcagcagcagtaccaggctccacagcagcagcag
cagaattatcaccaaaattcgcaaaatccatatcaacagccgaattatcaacagaatcaa
tatcagcctcagctacaacaattccagcaaaatccacgtcagcagcaacacgtctacagt
aaccctcaacagggctaccagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTCTGCTTTCCCAAATCTGCAAA 623 603 343 Antisense
ATGCTTTTGTGCTTGATGGCTGCTC 434 43 416 Antisense
GTCACCAGACATTCAGAACGCCCTG 365 465 486 Antisense
AACTCTGCCACCTCATCAAAATGCA 140 141 511 Antisense
AGCCCGGTGCCAGATGACGTCACCG 682 77 546 Antisense
GCAGCGGCCTCGAAAAAACGGGTCA 619 291 571 Antisense
AAGAGCCCAAACTCAGATGCCACGT 578 153 642 Antisense
CAGCCTCAGCTACAACAATTCCAGC 130 203 766 Antisense
CAATTCCAGCAAAATCCACGTCAGC 3 181 781 Antisense
CAGCAACACGTCTACAGTAACCCTC 611 203 805 Antisense
GTAACCCTCAACAGGGCTACCAGCA 332 461 821 Antisense
Sequence Source Affymetrix Proprietary Database