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[180032_at]

Description D2092.4 /REP_DB=WormBase Gene ID /WP=CE09103 /TR=P91194 /GB=AAB42224.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 21      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 42      6grp_total > 32      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1326
1 2 3 4 range
A 1115.9
(3)
P 		862.2
(1.4)
P 		973.1
(2.1)
P 		163.9
(-3)
P 		952
B 1006.6
(2.1)
P 		1141.9
(2.9)
P 		1156.1
(3)
P 		181.7
(-3)
P 		974
C 1212.5
(1.8)
P 		1102.3
(1.3)
P 		1472.2
(3)
P 		146.2
(-3)
P 		1326
avr 1111.7
(2.5) 		1035.5
(2) 		1200.5
(3) 		163.9
(-3) 		1037

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 878
1 2 3 4 5 6 range
A 946.4
(1.7)
P 		1117.6
(3)
P 		1009.9
(2.2)
P 		874.5
(1.2)
P 		605.2
(-0.9)
P 		323.4
(-3)
P 		794
B 1101.6
(2.8)
P 		987.8
(2)
P 		1128.1
(3)
P 		865.5
(1.2)
P 		620.3
(-0.5)
P 		250
(-3)
P 		878
C 1119.8
(3)
P 		895.4
(1.2)
P 		1124.3
(3)
P 		703.7
(-0.4)
P 		681.5
(-0.5)
P 		373.3
(-3)
P 		751
avr 1055.9
(2.8) 		1000.3
(2.3) 		1087.4
(3) 		814.6
(0.9) 		635.7
(-0.5) 		315.6
(-3) 		772
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 489
1 2 3 4 range
A 406.3
(3)
P 		187.2
(-0.4)
P 		254.4
(0.6)
P 		24
(-3)
P 		382
B 321
(3)
P 		282
(2.2)
P 		267.9
(1.9)
P 		38.7
(-3)
P 		282
C 401.4
(1.6)
P 		316.9
(0.6)
P 		513.1
(3)
P 		24.7
(-3)
P 		488
avr 376.2
(3) 		262
(1) 		345.1
(2.5) 		29.1
(-3) 		347

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 336
1 2 3 4 5 6 range
A 174.5
(-1.2)
P 		397.5
(3)
P 		219.9
(-0.3)
P 		221.8
(-0.3)
P 		182.6
(-1)
P 		78.7
(-3)
P 		319
B 383.3
(3)
P 		328.8
(1.9)
P 		273.9
(0.7)
P 		229.2
(-0.2)
P 		252
(0.3)
P 		93.2
(-3)
P 		290
C 415.1
(3)
P 		273.2
(0.1)
P 		286.2
(0.3)
P 		141.5
(-2.7)
P 		220.5
(-1)
P 		125
(-3)
P 		290
avr 324.3
(2.8) 		333.2
(3) 		260
(1.1) 		197.5
(-0.5) 		218.4
(0.1) 		99
(-3) 		234
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180032_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2508
Sequence Type Exemplar sequence
Representative Public ID D2092.4 NCBI
Target Description D2092.4 /REP_DB=WormBase Gene ID /WP=CE09103 /TR=P91194 /GB=AAB42224.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059502(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059502 NCBI Caenorhabditis elegans D2092.4 (D2092.4) mRNA, complete cds. 11/11 None
SNAP00000030845 ENSEMBL cdna:SNAP chromosome:CEL140:I:6620574:6624017:-1 11/11 None
GENEFINDER00000030858 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6620574:6624017:-1 11/11 None
D2092.4 ENSEMBL cdna:known chromosome:CEL140:I:6620319:6624017:-1 gene:D2092.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6620502-6623946(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2092.4
Entrez Gene 172378 Entrez gene
SwissProt P91194 EMBL-EBI
WormBase CE30438 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1641568_A_AT dm
DROSGENOME1:142237_AT dm
Protein Similarities
Method ID Description E-Value
blast AAB42224 Hypothetical protein D2092.4 [Caenorhabditis elegans] ref|NP_491903.2| D2092.4 [Caenorhabditis elegans] 1.0E-163
blast CAE67243 Hypothetical protein CBG12683 [Caenorhabditis briggsae] 1.0E-160
blast AAB42224 Hypothetical protein D2092.4 [Caenorhabditis elegans] ref|NP_491903.2| D2092.4 [Caenorhabditis elegans] 1.0E-156
blast CAE67243 Hypothetical protein CBG12683 [Caenorhabditis briggsae] 1.0E-152
blast XP_394728 PREDICTED: similar to ENSANGP00000014923 [Apis mellifera] 8.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491903.2 2 5-24,330-352
D2092.4 2 5-24,330-352
SNAP00000030845 2 5-24,330-352
GENEFINDER00000030858 2 5-24,360-382
Sequence
Target Sequence 
>C. ELEGANS:180032_AT
gtattcccatcattagtttactatagaagaaagaatccaattttgtatgacggagacttc
aaagactctgaaactctcctccgttggctccgtgctcacgaagaagttgccacgtgggat
ttgacagatgatacttttgaatcaagaactgattctcattctccagacgagggatctatt
gattggtttgtaatgttttatgatgctgatgaaggaaatagcaatgcatttgttccactt
tgggaaacagttgcacacaaacttcgaggccttgttaatgttggtaaaatcgaaatttcg
gtcaatgatgatgtaactgaaagattccatattgaggaacgagattgccctgttttcttg
ttggttcctgaaccaccaactgcaattgaacaagtctacgagttcgcaaaagaaaaaatt
atggatattatggacgataatcagacactttcggttctcggagtcggtggacttatcgta
attgtagccgtcacattgatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTCCCATCATTAGTTTACTATA 340 453 454 Antisense
TTGGCTCCGTGCTCACGAAGAAGTT 319 709 537 Antisense
GTTGCCACGTGGGATTTGACAGATG 297 441 559 Antisense
AACTGATTCTCATTCTCCAGACGAG 441 139 600 Antisense
GCAATGCATTTGTTCCACTTTGGGA 518 321 674 Antisense
AGTTGCACACAAACTTCGAGGCCTT 417 65 702 Antisense
AGGAACGAGATTGCCCTGTTTTCTT 358 55 788 Antisense
GAACCACCAACTGCAATTGAACAAG 699 343 823 Antisense
TAATCAGACACTTTCGGTTCTCGGA 540 635 891 Antisense
GTCGGTGGACTTATCGTAATTGTAG 242 473 916 Antisense
GTAATTGTAGCCGTCACATTGATCA 439 463 931 Antisense
Sequence Source Affymetrix Proprietary Database