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[180031_at]

Description F01D5.11 /REP_DB=WormBase Gene ID /WP=CE19773 /TR=Q9XVB3 /GB=CAB04037.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 44      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 9.2
(1.5)
A 		11.1
(3)
A 		3.3
(-3)
A 		5.8
(-1.1)
A 		8
B 6.6
(-3)
A 		6.8
(-2.7)
A 		11.1
(3)
A 		7.8
(-1.4)
A 		5
C 7.9
(1.6)
A 		9.5
(3)
A 		2.6
(-3)
A 		4.2
(-1.6)
A 		7
avr 7.9
(0.9) 		9.1
(3) 		5.7
(-3) 		5.9
(-2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 8.3
(-1.5)
A 		7.3
(-1.8)
A 		3.2
(-3)
A 		5.7
(-2.3)
A 		23.3
(3)
A 		9.1
(-1.2)
A 		20
B 5.9
(-0.2)
A 		9.4
(3)
A 		4
(-2)
A 		3.6
(-2.4)
A 		2.9
(-3)
A 		7.8
(1.5)
A 		7
C 8.2
(1)
A 		2.7
(-3)
A 		3.9
(-2.1)
A 		10.9
(3)
A 		3
(-2.8)
A 		4.5
(-1.7)
A 		8
avr 7.5
(0.8) 		6.5
(-0.2) 		3.7
(-3) 		6.7
(0) 		9.7
(3) 		7.1
(0.4) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3.3
(3)
A 		2.4
(0.8)
A 		0.9
(-3)
A 		0.9
(-3)
A 		2
B 2.1
(-0.3)
A 		1.7
(-3)
A 		2.6
(3)
A 		1.7
(-3)
A 		1
C 2.6
(2.7)
A 		2.7
(3)
A 		0.9
(-2.4)
A 		0.7
(-3)
A 		2
avr 2.7
(3) 		2.3
(1.5) 		1.5
(-1.5) 		1.1
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.5
(-2.2)
A 		2.6
(-1.2)
A 		0.7
(-3)
A 		1.5
(-2.2)
A 		7
(3)
A 		2.2
(-1.6)
A 		6
B 2.1
(0.1)
A 		3.1
(3)
A 		1
(-3)
A 		1
(-3)
A 		1.2
(-2.4)
A 		2.9
(2.4)
A 		2
C 3
(3)
A 		0.8
(-3)
A 		1
(-2.5)
A 		2.2
(0.8)
A 		1
(-2.5)
A 		1.5
(-1.1)
A 		2
avr 2.2
(0.5) 		2.2
(0.5) 		0.9
(-3) 		1.6
(-1.1) 		3.1
(3) 		2.2
(0.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180031_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2688
Sequence Type Exemplar sequence
Representative Public ID F01D5.11 NCBI
Target Description F01D5.11 /REP_DB=WormBase Gene ID /WP=CE19773 /TR=Q9XVB3 /GB=CAB04037.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064530(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064530 NCBI Caenorhabditis elegans F01D5.11 (F01D5.11) mRNA, complete cds. 11/11 None
SNAP00000039838 ENSEMBL cdna:SNAP chromosome:CEL140:II:13995293:13995768:1 11/11 None
F01D5.11 ENSEMBL cdna:known chromosome:CEL140:II:13995293:13995768:1 gene:F01D5.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13995289-13995765(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F01D5.11
Entrez Gene 184060 Entrez gene
SwissProt Q9XVB3 EMBL-EBI
WormBase CE19773 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04037 Hypothetical protein F01D5.11 [Caenorhabditis elegans] ref|NP_496931.1| F01D5.11 [Caenorhabditis elegans] 4.0E-75
blast CAB11553 Hypothetical protein Y49E10.17 [Caenorhabditis elegans] ref|NP_499622.1| Y49E10.17 [Caenorhabditis elegans] 9.0E-36
blast AAC48272 Hypothetical protein ZC513.10 [Caenorhabditis elegans] ref|NP_505079.1| ZC513.10 [Caenorhabditis elegans] 5.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 9.7E-13
Sequence
Target Sequence 
>C. ELEGANS:180031_AT
gaactatgtgtcagccctttttaataatcgaggattgagcctggagagttttatggtgac
cacctcggaagatgacacgaaattatacgatcctctcctatcacttcttcacaaaattgg
aagcgtttcagccgaatcagtgacaatcgaaggtgcgaccctggagacgaccgtaaaaat
tttgaaacacttcgagccagatgttctaaaggagttgcaaattagagctgtcgatgaagc
ttccatgcaggagctagtgggacttgatcagtggaaagcagttgaaacatttagtttgtt
tctttaccccgaacaatttcctcacttggtcaagcatctcaaccacgtcgcaacattgat
ggtcgacttgatggggcactctttatcgaacgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTATGTGTCAGCCCTTTTTAAT 365 349 15 Antisense
ATGGTGACCACCTCGGAAGATGACA 385 49 67 Antisense
GAAATTATACGATCCTCTCCTATCA 404 363 93 Antisense
GAAGCGTTTCAGCCGAATCAGTGAC 105 343 134 Antisense
GACAATCGAAGGTGCGACCCTGGAG 73 365 156 Antisense
GAAACACTTCGAGCCAGATGTTCTA 638 355 198 Antisense
GCTGTCGATGAAGCTTCCATGCAGG 524 295 241 Antisense
CTTGGTCAAGCATCTCAACCACGTC 272 217 339 Antisense
CAACCACGTCGCAACATTGATGGTC 257 187 354 Antisense
TGATGGTCGACTTGATGGGGCACTC 467 565 371 Antisense
ATGGGGCACTCTTTATCGAACGAAG 367 51 385 Antisense
Sequence Source Affymetrix Proprietary Database