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[180030_at]

Description C10F3.6 /REP_DB=WormBase Gene ID /WP=CE08071 /TR=O16882 /GB=AAB69888.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 18      6grp_cgc > 87      6grp_cgc_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 22.9
(-3)
A 		71.1
(0.1)
A 		43.4
(-1.7)
A 		115.8
(3)
A 		93
B 51.9
(-2.8)
A 		71
(3)
A 		51.4
(-3)
A 		59.3
(-0.6)
A 		20
C 32.2
(-2.6)
A 		48.4
(-1.8)
A 		23.6
(-3)
A 		144.6
(3)
A 		121
avr 35.7
(-3) 		63.5
(-0.6) 		39.5
(-2.7) 		106.6
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2908
1 2 3 4 5 6 range
A 77.7
(-2.9)
P 		29.7
(-3)
A 		56.4
(-2.9)
P 		2362.7
(2.9)
P 		2402.4
(3)
P 		196.9
(-2.6)
P 		2373
B 71.1
(-2.9)
P 		20.3
(-3)
A 		36.4
(-3)
A 		1856.8
(1.3)
P 		2556.1
(3)
P 		161.6
(-2.7)
P 		2536
C 69.9
(-2.9)
P 		38.2
(-3)
A 		28.3
(-3)
A 		2130
(1.3)
P 		2928.2
(3)
P 		177.4
(-2.7)
P 		2900
avr 72.9
(-2.9) 		29.4
(-3) 		40.4
(-3) 		2116.5
(1.8) 		2628.9
(3) 		178.6
(-2.7) 		2600
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 8.3
(-3)
A 		15.4
(2)
A 		11.3
(-0.9)
A 		16.9
(3)
A 		9
B 16.6
(2)
A 		17.5
(3)
A 		11.9
(-3)
A 		12.6
(-2.3)
A 		6
C 10.7
(-2.1)
A 		13.9
(-0.9)
A 		8.2
(-3)
A 		24.4
(3)
A 		16
avr 11.9
(-1.9) 		15.6
(1.1) 		10.5
(-3) 		18
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1032
1 2 3 4 5 6 range
A 14.3
(-3)
P 		10.6
(-3)
A 		12.3
(-3)
P 		599.2
(1.9)
P 		724.9
(3)
P 		47.9
(-2.7)
P 		714
B 24.8
(-2.9)
P 		6.8
(-3)
A 		8.8
(-3)
A 		491.8
(-0.2)
P 		1038.5
(3)
P 		60.3
(-2.7)
P 		1032
C 25.9
(-2.9)
P 		11.6
(-3)
A 		7.2
(-3)
A 		428.3
(-0.3)
P 		947.5
(3)
P 		59.4
(-2.7)
P 		940
avr 21.7
(-2.9) 		9.7
(-3) 		9.4
(-3) 		506.4
(0.3) 		903.6
(3) 		55.9
(-2.7) 		894
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180030_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12028
Sequence Type Exemplar sequence
Representative Public ID C10F3.6 NCBI
Target Description C10F3.6 /REP_DB=WormBase Gene ID /WP=CE08071 /TR=O16882 /GB=AAB69888.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072154
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000029258 ENSEMBL cdna:SNAP chromosome:CEL140:V:5988133:5989442:-1 9/11 None
GENEFINDER00000029262 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5988010:5989642:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182404 6/11 Cross Hyb Matching Probes None
NM_072154 1/11 Cross Hyb Matching Probes None
C10F3.7 6/11 Cross Hyb Matching Probes None
C10F3.6 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5988132-5992824(-) 98.98 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T32154 hypothetical protein C10F3.6 - Caenorhabditis elegans 1.0E-110
blast T32154 hypothetical protein C10F3.6 - Caenorhabditis elegans 1.0E-100
blast CAE64532 Hypothetical protein CBG09274 [Caenorhabditis briggsae] 6.0E-97
blast CAE64532 Hypothetical protein CBG09274 [Caenorhabditis briggsae] 5.0E-96
blast AAN84871 Hypothetical protein C10F3.7 [Caenorhabditis elegans] ref|NP_872204.1| C10F3.7 [Caenorhabditis elegans] 2.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029262 1 188-206
Sequence
Target Sequence 
>C. ELEGANS:180030_AT
gggtgagacgatctttctttctatttatgaatatataataaatgttgtcgttggacaaca
agtggaaacacagaaaccagacgatttcctttggaatcgatgggaaccaagaacaattga
ttgtgtgagcagtggaaagaaagatgactgtgttcttctcgcaccaaactcaagaattcc
atttgacatcaccaaatttaaatgccgacgtgaaccaatgccacaaaccaactggaacac
attagctgtgaactcaacaactcgattggcatgcccactaaactgtcctgttaattttga
tctttcggtacgtccctcccttttcatcaattttttgatcgaactaaatacttcacaggt
tcttcaaaaacaaccatacgtgaacaagaactgccaaaagtactacacttatggaaaata
ttgggatgtagctgccaatgattggtacatctggcagaccgagccatgcgtggctgcaat
ctcaactcactgccggttcaatgatgttccacataactacaatccagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTGAGACGATCTTTCTTTCTATT 32 499 1845 Antisense
GAAACCAGACGATTTCCTTTGGAAT 15 359 1917 Antisense
AAAGATGACTGTGTTCTTCTCGCAC 115 123 1984 Antisense
AATGCCGACGTGAACCAATGCCACA 260 167 2045 Antisense
TCAACAACTCGATTGGCATGCCCAC 2 631 2098 Antisense
ATGCCCACTAAACTGTCCTGTTAAT 422 37 2115 Antisense
ACTAAATACTTCACAGGTTCTTCAA 289 97 2187 Antisense
ACATCTGGCAGACCGAGCCATGCGT 511 105 2291 Antisense
AGCCATGCGTGGCTGCAATCTCAAC 403 83 2306 Antisense
TCAACTCACTGCCGGTTCAATGATG 412 629 2326 Antisense
GTTCCACATAACTACAATCCAGCAA 326 441 2350 Antisense
Sequence Source Affymetrix Proprietary Database