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[180029_at]

Description F22E5.5 /REP_DB=WormBase Gene ID /WP=CE09557 /TR=O16713 /GB=AAB66171.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 34      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 30.8
(-3)
A 		89
(3)
A 		56.1
(-0.4)
P 		49.1
(-1.1)
A 		58
B 51.3
(-3)
P 		82.2
(3)
P 		54.8
(-2.3)
P 		73.6
(1.3)
A 		31
C 30
(-3)
A 		47.2
(-1.4)
A 		39.1
(-2.2)
A 		95.4
(3)
M 		65
avr 37.4
(-3) 		72.8
(3) 		50
(-0.9) 		72.7
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 63.9
(3)
A 		41.5
(0)
M 		58.3
(2.3)
A 		18.5
(-3)
A 		39.7
(-0.2)
A 		29.7
(-1.5)
A 		45
B 54.4
(3)
A 		31.5
(-0.4)
A 		13.6
(-3)
A 		29.7
(-0.6)
A 		26.2
(-1.1)
A 		37.3
(0.5)
M 		41
C 47.6
(0)
P 		50.2
(0.4)
A 		47.6
(0)
A 		70.5
(3)
A 		24.1
(-3)
A 		47.5
(0)
A 		46
avr 55.3
(3) 		41.1
(-0.4) 		39.8
(-0.7) 		39.6
(-0.7) 		30
(-3) 		38.2
(-1.1) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.2
(-1)
A 		19.3
(3)
A 		14.7
(0.7)
P 		7.2
(-3)
A 		12
B 16.4
(-0.1)
P 		20.3
(3)
P 		12.7
(-3)
P 		15.7
(-0.6)
A 		8
C 9.9
(-3)
A 		13.6
(0.6)
A 		13.6
(0.6)
A 		16.1
(3)
M 		6
avr 12.5
(-3) 		17.7
(3) 		13.7
(-1.6) 		13
(-2.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 11.8
(1.2)
A 		14.8
(3)
M 		12.7
(1.8)
A 		4.7
(-3)
A 		12
(1.3)
A 		7.2
(-1.5)
A 		10
B 18.9
(3)
A 		10.5
(-0.2)
A 		3.3
(-3)
A 		7.9
(-1.2)
A 		10.7
(-0.2)
A 		13.9
(1.1)
M 		16
C 17.6
(3)
P 		15.3
(1.6)
A 		12.1
(-0.4)
A 		14.2
(0.9)
A 		7.8
(-3)
A 		15.9
(2)
A 		10
avr 16.1
(3) 		13.5
(0.8) 		9.4
(-2.6) 		8.9
(-3) 		10.2
(-1.9) 		12.3
(-0.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180029_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5628
Sequence Type Exemplar sequence
Representative Public ID F22E5.5 NCBI
Target Description F22E5.5 /REP_DB=WormBase Gene ID /WP=CE09557 /TR=O16713 /GB=AAB66171.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062070
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F22E5.5 ENSEMBL cdna:pseudogene chromosome:CEL140:II:2655340:2656476:1 gene:F22E5.5 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2655344-2656480(+) 100.0 100.0
chrII:3201196-3202357(-) 93.88 93.88
Public Domain and Genome References
Ensembl F22E5.5
Sequence
Target Sequence 
>C. ELEGANS:180029_AT
gtggataaggatgagcagatggattatgtgagagagcactacccggaatacacttcagaa
ttctcccagctcaaaaatttcgtgatctaccgaagaaacatctggatgacaatttccgcg
attctcttcatctgggcgttcattgtattcggttccattacgttttacaccacatttgac
atgtttcaaatgctaaatggagtacagaaaaaaatctcaataagaaattataaccgtgaa
aaagctgtagtacgaagtttggtggcccagctgattgcctcctcaataatcgcagtccct
ggtttggcaggcggactatgtgcgttttgggcgactggtgatttgaaaactgtcatcgaa
gttattggtgtgatcttcctactacgtggcacactccattcagttattctagtagcaact
acatcaccatataagaaatatattttgaggtttgaaaattccgcagaggatgccgccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGATAAGGATGAGCAGATGGATT 446 489 268 Antisense
TATGTGAGAGAGCACTACCCGGAAT 456 651 292 Antisense
AGAGAGCACTACCCGGAATACACTT 327 69 298 Antisense
CCTCAATAATCGCAGTCCCTGGTTT 229 241 548 Antisense
AATAATCGCAGTCCCTGGTTTGGCA 4 173 552 Antisense
CAGTCCCTGGTTTGGCAGGCGGACT 570 197 560 Antisense
GGTTTGGCAGGCGGACTATGTGCGT 523 505 568 Antisense
GGCAGGCGGACTATGTGCGTTTTGG 53 535 573 Antisense
CGGACTATGTGCGTTTTGGGCGACT 373 241 579 Antisense
TTTGAGGTTTGAAAATTCCGCAGAG 253 667 711 Antisense
GAAAATTCCGCAGAGGATGCCGCCC 243 349 721 Antisense
Sequence Source Affymetrix Proprietary Database