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[180027_s_at]

Description F44F1.6B /REP_DB=WormBase Gene ID /WP=CE23729 /TR=Q9U3E9 /GB=CAB54249.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 66      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_total > 57      4grp_total > 20      6grp_high1_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 60.2
(-3)
P 		71.3
(-1.6)
P 		65.3
(-2.4)
P 		107.9
(3)
P 		48
B 108.5
(2.5)
P 		83.4
(-0.2)
P 		57.7
(-3)
P 		113.1
(3)
P 		55
C 115.2
(3)
P 		104.3
(-0.7)
P 		97.6
(-3)
P 		114.5
(2.8)
P 		18
avr 94.6
(0.3) 		86.3
(-1) 		73.5
(-3) 		111.8
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 96.3
(1.3)
P 		59.7
(-2.6)
P 		56.3
(-3)
P 		97.6
(1.4)
P 		107.7
(2.5)
P 		112.4
(3)
P 		56
B 82.9
(3)
P 		75
(1.4)
P 		71.2
(0.6)
P 		53.9
(-3)
A 		61
(-1.5)
P 		66.8
(-0.3)
P 		29
C 62.8
(-1.1)
P 		100.3
(3)
P 		88.4
(1.7)
P 		78.8
(0.6)
A 		46
(-3)
P 		98.3
(2.8)
P 		54
avr 80.7
(-0.4) 		78.3
(-1.1) 		72
(-2.9) 		76.8
(-1.5) 		71.6
(-3) 		92.5
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 21.9
(3)
P 		15.5
(-3)
P 		17.1
(-1.5)
P 		15.8
(-2.7)
P 		6
B 34.6
(3)
P 		20.6
(-1)
P 		13.4
(-3)
P 		24.1
(0)
P 		21
C 38.1
(3)
P 		30
(0.4)
P 		34
(1.7)
P 		19.3
(-3)
P 		19
avr 31.5
(3) 		22
(-1.8) 		21.5
(-2.1) 		19.7
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 17.7
(-1.4)
P 		21.2
(-0.4)
P 		12.3
(-3)
P 		24.7
(0.7)
P 		32.5
(3)
P 		27.4
(1.5)
P 		20
B 28.8
(3)
P 		25
(1.4)
P 		17.3
(-1.8)
P 		14.3
(-3)
A 		24.8
(1.3)
P 		24.9
(1.4)
P 		15
C 23.3
(-0.2)
P 		30.6
(2.2)
P 		22.5
(-0.5)
P 		15.9
(-2.7)
A 		14.9
(-3)
P 		32.9
(3)
P 		18
avr 23.3
(0.2) 		25.6
(1.5) 		17.4
(-3) 		18.3
(-2.5) 		24.1
(0.7) 		28.4
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180027_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2469
Sequence Type Exemplar sequence
Representative Public ID F44F1.6B NCBI
Target Description F44F1.6B /REP_DB=WormBase Gene ID /WP=CE23729 /TR=Q9U3E9 /GB=CAB54249.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060928(11), NM_060929(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060928 NCBI Caenorhabditis elegans F44F1.6a (F44F1.6) mRNA, complete cds. 11/11 A 
NM_060929 NCBI Caenorhabditis elegans F44F1.6b (F44F1.6) mRNA, complete cds. 11/11 None
SNAP00000015373 ENSEMBL cdna:SNAP chromosome:CEL140:I:13269365:13270846:-1 11/11 None
GENEFINDER00000015380 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13269365:13270846:-1 11/11 None
F44F1.6a ENSEMBL cdna:known chromosome:CEL140:I:13269052:13270846:-1 gene:F44F1.6 11/11 None
F44F1.6b ENSEMBL cdna:known chromosome:CEL140:I:13270436:13270846:-1 gene:F44F1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13270367-13270777(-) 100.0 100.0
Public Domain and Genome References
Ensembl F44F1.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54248 Hypothetical protein F44F1.6a [Caenorhabditis elegans] ref|NP_493329.1| F44F1.6a [Caenorhabditis elegans] 0.0
blast F87986 protein F44F1.6 [imported] - Caenorhabditis elegans 0.0
blast CAB03104 Hypothetical protein F44F1.4 [Caenorhabditis elegans] ref|NP_493331.1| F44F1.4 [Caenorhabditis elegans] 1.0E-155
Sequence
Target Sequence 
>C. ELEGANS:180027_S_AT
cttctgaaatctctgcttccaagcttccgtatgttcgaattcctggatcaaaacctgtgc
cacgtcttctcaagtggactatttttaagtgctcattcatgaaaatcagaactattggac
tacaccatccagatggtcgtctttatttcttcgagttctgtcaaggaaaggacaccttcg
ttccccatgtgtgctctgcctgtcttccaataatcactgagaaggacctcttccctgact
acattgtgtgggctgaagaaatcgaagattatgtgatttttgcattcagctcgatgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCTGAAATCTCTGCTTCCAAGCT 386 219 23 Antisense
CTTCCAAGCTTCCGTATGTTCGAAT 457 219 38 Antisense
CCTGGATCAAAACCTGTGCCACGTC 528 265 64 Antisense
GTGCCACGTCTTCTCAAGTGGACTA 171 479 79 Antisense
GTGGACTATTTTTAAGTGCTCATTC 370 491 96 Antisense
GAACTATTGGACTACACCATCCAGA 86 351 131 Antisense
CCATCCAGATGGTCGTCTTTATTTC 609 271 147 Antisense
GTCTTTATTTCTTCGAGTTCTGTCA 176 469 161 Antisense
CTGCCTGTCTTCCAATAATCACTGA 106 237 218 Antisense
CCTCTTCCCTGACTACATTGTGTGG 640 267 249 Antisense
GATTTTTGCATTCAGCTCGATGTCG 587 427 297 Antisense
Sequence Source Affymetrix Proprietary Database