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[180026_at]

Description F07E5.7 /REP_DB=WormBase Gene ID /WP=CE09219 /TR=P91226 /GB=AAB37906.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 50      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 1.7
(-3)
A 		180
(3)
P 		115.8
(0.8)
P 		7
(-2.8)
A 		178
B 1.9
(-3)
A 		145.7
(2.5)
P 		158.8
(3)
P 		1.8
(-3)
A 		157
C 5.2
(-3)
A 		155.4
(3)
P 		108.5
(1.1)
P 		11
(-2.8)
A 		150
avr 2.9
(-3) 		160.4
(3) 		127.7
(1.8) 		6.6
(-2.9) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 6.9
(-2.8)
A 		67.8
(3)
A 		5
(-3)
A 		25
(-1.1)
A 		6.3
(-2.9)
A 		18.9
(-1.7)
A 		63
B 3.5
(-2.9)
A 		58.8
(3)
A 		3.1
(-3)
A 		14.7
(-1.7)
A 		20.2
(-1.2)
A 		3
(-3)
A 		56
C 2
(-3)
A 		59.7
(3)
A 		5.2
(-2.7)
A 		49
(1.9)
A 		21.6
(-1)
A 		6.2
(-2.6)
A 		58
avr 4.1
(-3) 		62.1
(3) 		4.4
(-3) 		29.6
(-0.4) 		16
(-1.8) 		9.4
(-2.5) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 0.6
(-3)
A 		39.1
(3)
P 		30.3
(1.6)
P 		1
(-2.9)
A 		39
B 0.6
(-3)
A 		36
(2.9)
P 		36.8
(3)
P 		0.4
(-3)
A 		36
C 1.7
(-3)
A 		44.7
(3)
P 		37.8
(2)
P 		1.9
(-3)
A 		43
avr 1
(-3) 		39.9
(3) 		35
(2.2) 		1.1
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.3
(-2.9)
A 		24.1
(3)
A 		1.1
(-3)
A 		6.3
(-1.6)
A 		1.9
(-2.8)
A 		4.6
(-2.1)
A 		23
B 1.2
(-2.9)
A 		19.6
(3)
A 		0.8
(-3)
A 		3.9
(-2)
A 		8.2
(-0.6)
A 		1.1
(-2.9)
A 		19
C 0.7
(-3)
A 		18.2
(3)
A 		1.3
(-2.8)
A 		9.9
(0.2)
A 		7
(-0.8)
A 		2.1
(-2.5)
A 		18
avr 1.1
(-3) 		20.6
(3) 		1.1
(-3) 		6.7
(-1.3) 		5.7
(-1.6) 		2.6
(-2.5) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180026_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5945
Sequence Type Exemplar sequence
Representative Public ID F07E5.7 NCBI
Target Description F07E5.7 /REP_DB=WormBase Gene ID /WP=CE09219 /TR=P91226 /GB=AAB37906.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061770(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061770 NCBI Caenorhabditis elegans F07E5.7 (F07E5.7) mRNA, complete cds. 11/11 None
SNAP00000023369 ENSEMBL cdna:SNAP chromosome:CEL140:II:2070071:2071421:-1 11/11 None
GENEFINDER00000023372 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2070691:2071299:-1 10/11 None
F07E5.7 ENSEMBL cdna:known chromosome:CEL140:II:2070702:2071421:-1 gene:F07E5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2070700-2071420(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07E5.7
Entrez Gene 184144 Entrez gene
SwissProt P91226 EMBL-EBI
WormBase CE09219 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37906 Hypothetical protein F07E5.7 [Caenorhabditis elegans] ref|NP_494171.1| F07E5.7 [Caenorhabditis elegans] 2.0E-87
blast AAB37906 Hypothetical protein F07E5.7 [Caenorhabditis elegans] ref|NP_494171.1| F07E5.7 [Caenorhabditis elegans] 2.0E-82
blast AAB37906 Hypothetical protein F07E5.7 [Caenorhabditis elegans] ref|NP_494171.1| F07E5.7 [Caenorhabditis elegans] 1.0E-73
blast AAB71061 Hypothetical protein R52.5 [Caenorhabditis elegans] ref|NP_494184.1| R52.5 [Caenorhabditis elegans] 3.0E-39
blast AAB71061 Hypothetical protein R52.5 [Caenorhabditis elegans] ref|NP_494184.1| R52.5 [Caenorhabditis elegans] 7.0E-38
blast AAB71061 Hypothetical protein R52.5 [Caenorhabditis elegans] ref|NP_494184.1| R52.5 [Caenorhabditis elegans] 5.0E-32
blast AAB71063 Hypothetical protein R52.6 [Caenorhabditis elegans] ref|NP_494185.1| R52.6 [Caenorhabditis elegans] 6.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 3.4E-70
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 1.6E-65
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 1.3E-66
Sequence
Target Sequence 
>C. ELEGANS:180026_AT
gaactattccaccggatgatgtctatatttcaagtacattaccatttgaggagactacta
cggaaatgatgacaacaatggaaacatccaccatgacagaaaaagtgtgtccggagatgc
cagccaccacgtgtatggacttgataaaacttggagcaaaattggaattagctgaagtag
acggatgccaagtggtacagtgcactggtggccaaattccgcggctgattaccagaaatt
cggttttttcaccgaaactatatgctgggttgagtgatgcgacaattgtttttcccgtac
ctccgacgacattggccggattcggtggaaaaagttttttcgactattatggccttattt
gtgacacttttaatggtaatttctactggacaatgacaaaatatccggatgggctcatcg
atttgggcgggggacagccgattctaggctcagatggttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTATTCCACCGGATGATGTCTA 175 351 17 Antisense
AAAAGTGTGTCCGGAGATGCCAGCC 438 131 117 Antisense
CCAGCCACCACGTGTATGGACTTGA 422 273 136 Antisense
GTGGTACAGTGCACTGGTGGCCAAA 464 489 208 Antisense
GTGGCCAAATTCCGCGGCTGATTAC 253 491 224 Antisense
GATGCGACAATTGTTTTTCCCGTAC 342 413 292 Antisense
ACCTCCGACGACATTGGCCGGATTC 101 87 315 Antisense
GTTTTTTCGACTATTATGGCCTTAT 251 449 350 Antisense
AATATCCGGATGGGCTCATCGATTT 423 173 416 Antisense
GATTTGGGCGGGGGACAGCCGATTC 286 401 436 Antisense
GCCGATTCTAGGCTCAGATGGTTCA 314 283 453 Antisense
Sequence Source Affymetrix Proprietary Database